Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01840 ATGGCGGCAGCGGTCGGAGGAGGTAGTGGTAACGGCGGCGGTTTAATGATCGGCGGTGGAGATGTGTCGAAGGCGCATGCGGCTATGGCTTTGGTGCAAGTAATCAATGGAGGTTACCATGTTATAACCAAAGTCGCCCTCAATGTTGGAATGAACCAGCTCGTCTTTTGTTTGTTTCGCGACTTGTTGGCTCTTGCGATTCTTGCCCCTGTCGCTTATGTTCGGGAGAAGCGGATTCGCTTGCCCATGACTCGAGACCTCCTCATATCGTTCTTCGTTCTTGGTTTAACTGGGATTTTTGGTAACCAGCTTCTCTTTCTTGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAGCCTGCCATTCCAGTTTTTACATTCCTTTTTGCTGTTATGATGGGCACAGAGACTGTGAACTTACTCAAACTGGAAGGACAGGCTAAGATTGGAGGTACACTCGTTTGTGTCTCTGGTGCCATACTGATGGTTTTATTCCGTGGTCCAGCTTTGGTTGGAAGCACTGAATCTGATTTCATGTCGCATAGCGAAATAAGTGCAAGAGGCCAGCCAGAGCCTGCTGGATGGTTAATGTCTAACTTTCTGGAGTATGGATTGGATCATTTTCATGTTGGGGTTTTATGCTTGATAGGGAACTGTATGTGCATGGCTGCTTTCTTGGCTATCCAGACTTCCTATCCTTGCTGGTTTCAGAGGTCTATTGACTATCGAATCCTAAAGTCTCATTGTAGGTGGGCACGGGTGTTAAAGAAGTATCCTGCTAACTTATCGGTCACAGCATATTCTTATTTATTTGGTGCTATATTGATGGTGATCACATCTTTCTTTATGACCAACGAATCCACAGACTGGAATTTGACGCAATCAGAGTTTTTTGCTGTCCTTTATGCTGGAGTTTTTGCATCTGCCATCAATTATGGACTCTTGACATGGTGCAATAAAATATTGGGACCTGCATTGGTCGCTCTTTACAATCCACTTCAACCTGCAGCATCTGCGCTGCTATCAAGAGTTTTCATAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGATCTCTTATAATTGCTGGTCTTTATTTGGTTACTTGGGCGTCGCATAGGGAACAACAAACGACACCAGTTTTGCTACCACATTCGATCAGGTCCTCTGAACCACTTATTCATAAAGATGCATTGACTAACAAGTTTGCATATCAGATAGGACACATTTTCTCAGGGTCTGCCTCATCACCCAAATCTGTAGATTAG 1278 44.68 MAAAVGGGSGNGGGLMIGGGDVSKAHAAMALVQVINGGYHVITKVALNVGMNQLVFCLFRDLLALAILAPVAYVREKRIRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPAIPVFTFLFAVMMGTETVNLLKLEGQAKIGGTLVCVSGAILMVLFRGPALVGSTESDFMSHSEISARGQPEPAGWLMSNFLEYGLDHFHVGVLCLIGNCMCMAAFLAIQTSYPCWFQRSIDYRILKSHCRWARVLKKYPANLSVTAYSYLFGAILMVITSFFMTNESTDWNLTQSEFFAVLYAGVFASAINYGLLTWCNKILGPALVALYNPLQPAASALLSRVFIGSPIYLGSVLGGSLIIAGLYLVTWASHREQQTTPVLLPHSIRSSEPLIHKDALTNKFAYQIGHIFSGSASSPKSVD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25522556 25527076 - Lsi04G018400.1 Lsi04g01840 661889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01840 425 PANTHER WAT1-RELATED PROTEIN 23 233 IPR030184 GO:0016021|GO:0022857
Lsi04g01840 425 PANTHER WAT1-RELATED PROTEIN 255 417 IPR030184 GO:0016021|GO:0022857
Lsi04g01840 425 Pfam EamA-like transporter family 29 148 IPR000620 GO:0016020|GO:0016021
Lsi04g01840 425 Pfam EamA-like transporter family 259 372 IPR000620 GO:0016020|GO:0016021
Lsi04g01840 425 PANTHER WAT1-RELATED PROTEIN 23 233 - -
Lsi04g01840 425 PANTHER WAT1-RELATED PROTEIN 255 417 - -
Lsi04g01840 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 168 - -
Lsi04g01840 425 SUPERFAMILY Multidrug resistance efflux transporter EmrE 272 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01840 Lsi-Chr4:25522556 Lsi02g01668 Lsi-Chr2:22494244 4.67E-44 dispersed
Lsi04g01840 Lsi-Chr4:25522556 Lsi08g01356 Lsi-Chr8:21887221 1.64E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01840 - - csv:101222886 735.717