Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01861 ATGGGCTTCTATACGGAAAAATGGCAATGGCTACTGATTCTTCACATTGTACCGCTTTGCATGATAATGAGCAGAAGCAGTGCTATCAGTTCTGATGGCGAGGCACTTTTGAGCTTCAGAGCATCAATTCTTGATTCTGATGGTGTTCTTCTTCAATGGAAGCCAGAGGAACCCCATCCTTGTACGTGGAAAGGAATAACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGTCTTCCTTATCACAAACTTAGTGGATCGTTATCCCCTGAACTTGGAAAGCTTGACCACCTTAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAAGGAATGTTCCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTAGGGAATCTTTCGGCACTTAAAAATTTGATTTGTGAAGTTCTTATTGAACTCAACATAAGACTTCTCATCAGAGTAACTTTGTCCTGGCTTTTCATGAGTAAAGGTCTAGTGCTGGATGGTTGTGGAGGTGCTCGTGCGTTGGGTGTAATGTTTCACGGAGACTTGCCATACGTATCTAAAGATATTATTAAGAAATTTGAGACATTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTCTTTGCCTTGAAAAGAATTGTAAAATTGAATGAGGGCTTTGATCGGTTTTTTGAGAGAGAGCTCGAAATCCTTGGAAGCATAAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGACGAGGCACTACACGATTTTCCTCTGTACTGCGAGGCAAGTCCAGTAATATGCCTCCGTACTGAAGTTTCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCACGATTGCTCTCCACGGATCATTCACCGAGACATAAAATCAAGCAACATTTTACTTGATGCGAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTTTTAGAGGATGAAGAATCACATATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGGGTATTGGTACTTGAAGTGTTGAGTGGTAAACGTCCCACAGATGCTTCATTCATTGAGAAGGGCCTAAACATTGTTGGTTGGTTAAACTTTCTAGTCACAGAGAATCGACAGCGAGAAATAGCTGACTTACAGTGTGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTTTCGATTGCCATCCAATGTGTTTCGTCGAGTGCAGAGGATCGACCAACCATGCACAGGGTAGTCCAGATACTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAG 1530 41.63 MGFYTEKWQWLLILHIVPLCMIMSRSSAISSDGEALLSFRASILDSDGVLLQWKPEEPHPCTWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGMFLQGNYFSGFIPNELGNLSALKNLICEVLIELNIRLLIRVTLSWLFMSKGLVLDGCGGARALGVMFHGDLPYVSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHDFPLYCEASPVICLRTEVSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIADLQCEGMQAESLDALLSIAIQCVSSSAEDRPTMHRVVQILESEIMTPCPSDFYDTD 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25741130 25750283 - Lsi04G018610.1 Lsi04g01861 661910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01861 509 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 4 150 IPR031071 GO:0004672|GO:0005524|GO:0030244
Lsi04g01861 509 PANTHER RECEPTOR-LIKE PROTEIN 55 165 507 - -
Lsi04g01861 509 SUPERFAMILY Protein kinase-like (PK-like) 197 493 IPR011009 -
Lsi04g01861 509 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Lsi04g01861 509 Pfam Protein kinase domain 212 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01861 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Lsi04g01861 509 SMART serkin_6 210 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01861 509 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Lsi04g01861 509 Gene3D Transferase(Phosphotransferase) domain 1 287 500 - -
Lsi04g01861 509 ProSitePatterns Protein kinases ATP-binding region signature. 216 242 IPR017441 GO:0005524
Lsi04g01861 509 Gene3D Phosphorylase Kinase; domain 1 188 285 - -
Lsi04g01861 509 SUPERFAMILY L domain-like 29 153 - -
Lsi04g01861 509 ProSiteProfiles Protein kinase domain profile. 210 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01861 509 PANTHER RECEPTOR-LIKE PROTEIN 55 4 150 - -
Lsi04g01861 509 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 165 507 IPR031071 GO:0004672|GO:0005524|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01861 Lsi-Chr4:25741130 Lsi07g00757 Lsi-Chr7:8257843 1.45E-153 dispersed
Lsi07g00755 Lsi-Chr7:8251909 Lsi04g01861 Lsi-Chr4:25741130 5.76E-36 dispersed
Lsi07g00756 Lsi-Chr7:8257298 Lsi04g01861 Lsi-Chr4:25741130 4.43E-25 dispersed
Lsi04g01861 Lsi-Chr4:25741130 Lsi06g01488 Lsi-Chr6:25343556 1.31E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83596 PF00069 Pkinase 1.20E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01861 - - csv:101211605 784.637