Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01862 ATGGGAACAATGGCGTCTGTGGCTTGCTTGTTCAATTTGGGAGGAGTTGGAATGGTAGGATCATCAGAGAAACCTCGTTCACAGTTTCGTGGAGTTTGTTTGTCGAGAAGAGGTTTTAAAGGAAGTAATAGATGGTATTATGTATCATTTCCTCTTTGTAAATATTCAGCAACAACAACAACTGATTTTGTTGCCGACCAAGGCAATGCCATCTCTGTTGATTCTAATTCTTATAGAAGAAGTAAAGAAGATGACAACACAGATTTTCTTCTCAAGCCAGCTCCCAAGCCAGTATTGAAAGCCGCAGAGTCTAAGCCCCTTGTAGGTTTGAATAAGGTAACATGGGAATCTCCGAGAACTAATGGGGATTCTAACAGTAACAGAAAATTGTTGGATGATGAAGAAGAAAGGAGCAAGGTGATTGAGTCTCTTGGAGAGGTATTGGAAAAGGCTGAAAAGCTAGAGACTCCAAAGTTGGGTAATAAGAAACCAGGAAGAGGTGTAGATAAGCCAACAACATCAAGCTCGGGCTCTAATTCGAAGCCAGTAAACTCAATGGCGAATCGAAAATCTAAAACTTTGAAAAGTGTTTGGCGCAAGGGAGATACAGTTGCATCGGTTCAGAAGATTGTAGCAGAGCCATCTAAGTCTAATGGTGAAGTTGAAGCTAAACCAGGGGCGGCTAGCAAGGTAGAGGCTCACTCACGGGCTGCTTTCCGACCCCCTCAACCACCTGTGAAACCACAACCAAAATTACAAGAAAAGCCTTTGGCTGCACCACGACCTACATTAAAGAAACCAGTTGTCTTGAAGGATGTGGGGGCAGCAACTGTGACAGCAGATGATGAAACGAATACAGCAGCAAAGACAAAAGAGAGAAAGCCAATTCTGATTGACAAATATGCTTCAAAGAAACCTGCAGTTGATCCTTTTATTTCTGACTCTGTATTGGCCCCAACAAAACCTGGAAAAGCCCCTCCTCCTGGAAAGTTCAAGGACGATTACCGCAAGAAGAGTGTTGCATCAGGAGGTCCACGAAGGAGAATGGTTGATAAAGATGATGTTGAAATCCCCGATGATGTTTCCATTGCTAGTGTGACTACAGCACGAAAAGGAAGGAAATGGAGCAAGGCGAGCCGGAAGGCAGCAAGAATCCAGGCTTCCAAAGATGCTGCCCCTGTGAAAGTTGAAATTCTAGAAGTTGAAGAAAGTGGTATGTTACTTGAGGAATTGGCATACAATTTGGCCATCAACGAAGGTGAAATTCTTGGGTATTTATATTCAAAGGGGATTAAGCCTGACGGTGTGCAAACTTTAGATAAAGATATAGTGAAGATGATCTGCAAAGAGTATGATGTGGAGACCATAGACATTGATCCGGTTAAAGTTGAAGAGATGGCTAAAAAGAGGGATATTTTTGATGAAGAAGATCTGGATAAACTTCAAAGCAGGCCTCCAGTAATCACCATTATGGGACATGTTGACCATGGCAAGACTACACTTTTGGACTACATCCGCAGGAGCAAGGTAGCTGCATCAGAAGCTGGTGGGATTACTCAAGGAATTGGTGCTTATAGGGTGTTGGTACCACTTGATGGCAAGTTGCAGCCATGCGTGTTCCTTGATACTCCAGGGCATGAGGCGTTTGGAGCCATGAGAGCTCGTGGTGCTCGGGTGACAGACATTGCCATCATTGTGGTGGCTGCTGATGATGGAATCCGGCCTCAGACAAATGAGGCTATAGCTCATGCCAGAGCAGCTGGAGTACCAATAGTGATTGCGATAAATAAGATTGACAAAGATGGTGCTAATGCAGATAGAGTGATGCAAGAACTTTCCTCTATCGGTCTAATGCCAGAGGACTGGGGTGGTGACATCCCCATGGTGCAGATTAGTGCTCTTAAAGGGCTGAATGTGGATGACCTGTTGGAAACAGTAATGCTTCTTGCTGAGTTGCAAGAGTTGAAGGCTAATCCCGATAGAAGTGCGAAAGGGACCGTCATTGAGGCAGGTCTTGACAAATCAAAAGGACCGTTTGCTACATTTATTGTACAGAATGGAACCCTTAAAAGGGGAGATGTTGTAGTATGTGGGGAGGCCTTTGGGAAGGTTAGAGCTTTATTTGATGATGGCGGGAAACGAGTCGACGAAGCTGGACCTTCTTTACCAGTACAGGTTATTGGGTTAAATATTGTGCCAATTGCCGGTGATGTATTTGAGGTTGTTGATTCCCTTGATACTGCTCGAGAAAAGGCAGAGTTACGTGCCGAGGCCTTGCGGTCACAACGAATATCAGATAAGGCTGGAGATGGGAAGGTTACCCTTTCTTCTTTAGCTTCAGCAGTTTCATCAGGAAAGCAGTCTGGGTTAGACTTACACCAACTGAACATAATTATGAAGGTCGATGTTCAGGGATCAATTGAGGCCATTAGACAAGCCCTTCAGGTGCTCCCGCAAGAAAATGTCTCTTTGAAGTTTCTTTTGCAAGCAACTGGCGATGTGAGCTCCAGTGATATTGATCTTGCAGTTGCAAGCAAAGCCATAATTTTAGGATTTAATGTCAAAGCACCAGGTTCTGTCAAGAGTTATGCAGAAAATAAAGGTGTCGAGATCAGGCTGTATAGAGTCATCTACGAGCTTATTGATGATGTGCGGAATGCAATGGAGGGACTCCTAGAACCTGTAGAGGAAAAAGTACCAATAGGGTCGGCAGAAGTCCGTGCAGTATTCAGCAGTGGCAGTGGTCTTGTTGCTGGATGCATGGTAGTAGAAGGAAAGCTGGTAAAGGGCTGTGGCATTCGGGTTCTGCGAAAGGGTAAAACGGCGTATAGTGGCCAACTTGATTCACTGCGACGGGTTAAAGAAATCGTGAAAGAGGTACCAACACTACGAAGTTTACCCTTCAAAAATCCTACTTCCCTTGGGCCCATACATGATACAATTCTAGCCCTTGCCTTTGAAAGTGTGGCCACACTAGAGTTGATAAAAGAAGTAAATGCTGGCTTAGAGTGTGGAGTTGGGATGGAGGACTACAATGATTGGGAGGTGGGGGATGTAATAGAGGCCTTCAACACGGTTCAGAAGAAGCGGACGCTAGAGGAGGCCTCGGCTTCAATGGCAGCTGCGCTGGAGGAAGCTGGAATTGACTTCCGATGTTCAACGATACTGAGGACGTGTCATTGTTTTGTGATTGACTTGAGGATCAGGGTAGCGCCGAGAAACTACGATTCTAAGAGTAAAAATTTCCCTTCCATAATGGATGATAAAGTAAGGGTGTTAATTGCTCCTCATCGCGTCAAGTCGAGTCTTCCCATTTGCTCTTCTTCCTCAAAACCTCAAATTCCACTATTTCTAAGGCCACCAAATTACTCCGCCACACTCACAGATCTCCACAAATGGCACAATTGGGCCAAAACCCTAAATTCTTCAGTTGGGTCATCCTTTGTCGACACAGACAATGGTCCAGACTCCACCCTCTTACACAGAGAGCTCAAATGGCTGGTACAAGATGCAGTTGAAGATAAATCTGTAAGTTCTGAACTAGGAGATGAATTAGAGCGGAATCCTGAACAGCGTCTTAGAAATGTAAGGTTAAAGGTGGGAATCGAGGAGCTCTACAGGCTTTGGAAACAGAGGATCCATGAAAGGAGACCGTTCCAATACATTGTTGGGTGCGAGCATTGGAGGGATTTGATTTTGAGTGTGGAAGAAGGAGTTTTGATTCCGAGGCCTGAGACAGAGGCTTTGGTGGATTTGGTGAGTAAAGTGGTTTCTGATAATGAAGCACTTAGAGAAGGATTTTGGGTTGATTTGGGTACTGGGAGTGGTGCAATTGCTATTGGGATTTGTAGGATTTTGGAGGGTCGTGCTAGAGTTATAGCTACTGATTTAAGCTCCATTGCACTTGCTGTTGCCGGCTATAATGTTCAGAGGTATGGGTTACAGGACTTGATCGAGTTAAGGCAAGGATCATGGTACGAGCCATTACAGGACGTCCAAGGAAAGCTATCTGGGATTATTAGTAATCCTCCATACATTCCCAGTGATAATATTTTTGGTTTACAAGCTGAGGTTGGTAAACATGAACCTCGACTGGCATTGGATGGAGGCAGTAATGGCATGGATGAGCTTATACATCTATGTGATGAAGCTGCTGTAATGTTGAAACCTGGTGGTTTCTTTGCATTTGAGACAAACGGTGAAGATCAGTGCAAGCATCTAGTGAACTACATGGAAAATAATCACAAAGGGAGATTTTGTCATCTGAAAATAGTTTCTGATTTTGTAGGCATTCCAAGATTCATAACTGGATTCCTCAATGAGGCCATTTAA 4332 44.32 MGTMASVACLFNLGGVGMVGSSEKPRSQFRGVCLSRRGFKGSNRWYYVSFPLCKYSATTTTDFVADQGNAISVDSNSYRRSKEDDNTDFLLKPAPKPVLKAAESKPLVGLNKVTWESPRTNGDSNSNRKLLDDEEERSKVIESLGEVLEKAEKLETPKLGNKKPGRGVDKPTTSSSGSNSKPVNSMANRKSKTLKSVWRKGDTVASVQKIVAEPSKSNGEVEAKPGAASKVEAHSRAAFRPPQPPVKPQPKLQEKPLAAPRPTLKKPVVLKDVGAATVTADDETNTAAKTKERKPILIDKYASKKPAVDPFISDSVLAPTKPGKAPPPGKFKDDYRKKSVASGGPRRRMVDKDDVEIPDDVSIASVTTARKGRKWSKASRKAARIQASKDAAPVKVEILEVEESGMLLEELAYNLAINEGEILGYLYSKGIKPDGVQTLDKDIVKMICKEYDVETIDIDPVKVEEMAKKRDIFDEEDLDKLQSRPPVITIMGHVDHGKTTLLDYIRRSKVAASEAGGITQGIGAYRVLVPLDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHARAAGVPIVIAINKIDKDGANADRVMQELSSIGLMPEDWGGDIPMVQISALKGLNVDDLLETVMLLAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDGGKRVDEAGPSLPVQVIGLNIVPIAGDVFEVVDSLDTAREKAELRAEALRSQRISDKAGDGKVTLSSLASAVSSGKQSGLDLHQLNIIMKVDVQGSIEAIRQALQVLPQENVSLKFLLQATGDVSSSDIDLAVASKAIILGFNVKAPGSVKSYAENKGVEIRLYRVIYELIDDVRNAMEGLLEPVEEKVPIGSAEVRAVFSSGSGLVAGCMVVEGKLVKGCGIRVLRKGKTAYSGQLDSLRRVKEIVKEVPTLRSLPFKNPTSLGPIHDTILALAFESVATLELIKEVNAGLECGVGMEDYNDWEVGDVIEAFNTVQKKRTLEEASASMAAALEEAGIDFRCSTILRTCHCFVIDLRIRVAPRNYDSKSKNFPSIMDDKVRVLIAPHRVKSSLPICSSSSKPQIPLFLRPPNYSATLTDLHKWHNWAKTLNSSVGSSFVDTDNGPDSTLLHRELKWLVQDAVEDKSVSSELGDELERNPEQRLRNVRLKVGIEELYRLWKQRIHERRPFQYIVGCEHWRDLILSVEEGVLIPRPETEALVDLVSKVVSDNEALREGFWVDLGTGSGAIAIGICRILEGRARVIATDLSSIALAVAGYNVQRYGLQDLIELRQGSWYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRLALDGGSNGMDELIHLCDEAAVMLKPGGFFAFETNGEDQCKHLVNYMENNHKGRFCHLKIVSDFVGIPRFITGFLNEAI 1443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25759528 25773133 + Lsi04G018620.1 Lsi04g01862 661911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01862 1443 TIGRFAM hemK_fam: methyltransferase, HemK family 1202 1441 IPR004556 GO:0006479|GO:0008276
Lsi04g01862 1443 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 1339 1345 IPR002052 GO:0003676|GO:0008168|GO:0032259
Lsi04g01862 1443 CDD IF2_mtIF2_II 663 757 IPR044145 -
Lsi04g01862 1443 MobiDBLite consensus disorder prediction 168 192 - -
Lsi04g01862 1443 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1202 1414 IPR029063 -
Lsi04g01862 1443 SUPERFAMILY Translation proteins 659 742 IPR009000 -
Lsi04g01862 1443 CDD mtIF2_IVc 902 1022 - -
Lsi04g01862 1443 Gene3D Vaccinia Virus protein VP39 1233 1439 IPR029063 -
Lsi04g01862 1443 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 993 1040 IPR015760 -
Lsi04g01862 1443 TIGRFAM IF-2: translation initiation factor IF-2 406 961 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lsi04g01862 1443 TIGRFAM small_GTP: small GTP-binding protein domain 485 646 IPR005225 GO:0005525
Lsi04g01862 1443 MobiDBLite consensus disorder prediction 313 350 - -
Lsi04g01862 1443 Gene3D Translation factors 659 774 - -
Lsi04g01862 1443 MobiDBLite consensus disorder prediction 152 268 - -
Lsi04g01862 1443 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 483 656 IPR000795 GO:0003924|GO:0005525
Lsi04g01862 1443 CDD IF2_eIF5B 486 652 - -
Lsi04g01862 1443 SUPERFAMILY Translation proteins 898 961 IPR009000 -
Lsi04g01862 1443 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 790 902 IPR036925 -
Lsi04g01862 1443 Gene3D - 791 896 IPR036925 -
Lsi04g01862 1443 MobiDBLite consensus disorder prediction 114 136 - -
Lsi04g01862 1443 PRINTS GTP-binding elongation factor signature 487 500 IPR000795 GO:0003924|GO:0005525
Lsi04g01862 1443 PRINTS GTP-binding elongation factor signature 539 549 IPR000795 GO:0003924|GO:0005525
Lsi04g01862 1443 PRINTS GTP-binding elongation factor signature 555 566 IPR000795 GO:0003924|GO:0005525
Lsi04g01862 1443 PRINTS GTP-binding elongation factor signature 591 600 IPR000795 GO:0003924|GO:0005525
Lsi04g01862 1443 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 993 1040 - -
Lsi04g01862 1443 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 29 961 - -
Lsi04g01862 1443 Pfam Translation-initiation factor 2 789 884 IPR023115 -
Lsi04g01862 1443 Pfam Methyltransferase small domain 1264 1345 IPR007848 GO:0008168
Lsi04g01862 1443 Gene3D - 480 658 IPR027417 -
Lsi04g01862 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 659 IPR027417 -
Lsi04g01862 1443 Gene3D Translation factors 897 964 - -
Lsi04g01862 1443 Gene3D Translation factors 989 1031 - -
Lsi04g01862 1443 CDD AdoMet_MTases 1269 1348 - -
Lsi04g01862 1443 Coils Coil 742 762 - -
Lsi04g01862 1443 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 29 961 IPR015760 -
Lsi04g01862 1443 SUPERFAMILY Translation proteins 995 1030 IPR009000 -
Lsi04g01862 1443 MobiDBLite consensus disorder prediction 327 350 - -
Lsi04g01862 1443 Hamap Translation initiation factor IF-2 [infB]. 3 1030 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lsi04g01862 1443 Pfam Elongation factor Tu GTP binding domain 488 649 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01862 K02519 infB, MTIF2; translation initiation factor IF-2 - csv:101216442 1780.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02020 Lsi-Chr2:26210804 Lsi04g01862 Lsi-Chr4:25759528 5.11E-23 dispersed
Lsi04g01862 Lsi-Chr4:25759528 Lsi07g00695 Lsi-Chr7:7473878 4.28E-111 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004219 3 2 2 2 2 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01862 Lsi_Chr04 FPKM 6.726854 6.911837 4.525281 5.052857 5.930504 5.705738 6.545765 12.2095 11.31391 11.728905