Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01865 ATGGATTTCGTTTCGAATTCACTGGCTTGCAAGACTCTCCCTTGCCGGAATCTGTTTCCGCCGTACGCAACATCTTCCCGCCCCCGCCAATGGTTGCCTTTTTCACTCTCCAATGCAGGCAAGCGAGTTAGAGAGGTTCGCTGCGAGTTCGAAGTGAACGTTAATGGCGCTCTTTCCGGCGACTTCGACCCTCGTTCCGTTGACAGGAAAAAAGCATTGGAGGCAGCAATGAATGACATAAATAGCTCATTTGGGAAAGGAAGTGTTACACGACTTGGAAGTGCCGGTGGAGCATTAGTGGAAACTTTCCCAAGTGGCTGTTTGACTTTAGATTGTGCCTTAGGTGGTGGCCTTCCTAAAGGCAGAATTGTCGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACCCTAGCATTGCATGCAATTGCAGAAGTACAGAAACTAGGAGGAAATGCGATGCTTGTAGATGCAGAACATGCCTTTGATCCAGCATACTCTAAAGCCGTAGGAGTGGATGTAGAAAATTTAATTGTATGCCAACCTGATCACGGGGAGATGGCTCTTGAGATTGCAGATCGCATGTGTAGATCTGGTGCTGTAGATCTCATTTGTGTTGATTCTGTCTCTGCACTTACACCAAGAGCAGAAATCGAAGGTGAGATTGGTATGCAGCAAATGGGTTTGCAAGCACGCCTCATGAGTCAAGCTCTTCGTAAAATGTCTGGAAATGCCTCAAAAGCTGGTTGCACTCTCATATTTTTGAATCAAATACGATATAAGATTGGTGTGTATTATGGAAATCCAGAAGTGACAAGTGGAGGAATTGCGCTGAAGTTCTTTGCCTCACTTCGACTTGAAATACGTCCTATTGGGAAGCTAAAGTCTGCTAAAGGAGATGAAGAAATTGGGATTCGAGTTCGTGTTAGAGTCCAAAAGAGTAAGGTAAAACTGCTTGGTAGGATGGTGTTGAATAAACTTGGTGAAGGCCGCATATTAGAGAAATTCGTTAAGGCTGATTTACTTTCAAAAGAACGAAAGGATGTTATTCTCCGACAGTCCACAATCATCAACGTCCTGAGGATAAGGTGTGTTTTAGGGGCTGGTAATGATAGGAATGCTAGTAGTATAGAAATTAGGATATTAGTAGGAGATGGACCTTTTGTCACCAAAGGAGCACCTGCTTTTGAAGAAGCAACTCTACTGCTATTCATGGGTTGTAACTTGTATAATTATGGGTTTATAGTTGTGTCGAGGCCATACAAGCAAGCTGAATTTGAAATTATCTTTGGAGAGGGAGTAGGTAAACTGGTCAGTATTCTAGGAGGTTGCATTTTAGATTGTGCTGAAATTATGGACATTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGACCACAGGTTGGGACAGGGAAGAGACAGAGCTCTGCAATACTTAAAAGATAATCCTGCTCTTCAAGATGAAATTGAGAAGGCTGTGCAGACCATGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCTATTAGAAAGCCATTGCCGAATCAAGAAGAGGTACTTGAGGAGTTAGAATAA 1575 43.37 MDFVSNSLACKTLPCRNLFPPYATSSRPRQWLPFSLSNAGKRVREVRCEFEVNVNGALSGDFDPRSVDRKKALEAAMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKLKSAKGDEEIGIRVRVRVQKSKVKLLGRMVLNKLGEGRILEKFVKADLLSKERKDVILRQSTIINVLRIRCVLGAGNDRNASSIEIRILVGDGPFVTKGAPAFEEATLLLFMGCNLYNYGFIVVSRPYKQAEFEIIFGEGVGKLVSILGGCILDCAEIMDIVVKKGSWYSYGDHRLGQGRDRALQYLKDNPALQDEIEKAVQTMLTSGTVQMGFQSIRKPLPNQEEVLEELE 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25777554 25785942 - Lsi04G018650.1 Lsi04g01865 661914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01865 524 SMART AAA_5 120 291 IPR003593 -
Lsi04g01865 524 TIGRFAM tigrfam_recA: protein RecA 68 315 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 ProSiteProfiles RecA family profile 1. 99 257 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lsi04g01865 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 316 IPR027417 -
Lsi04g01865 524 PRINTS RecA protein signature 273 301 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 PRINTS RecA protein signature 409 438 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 PRINTS RecA protein signature 468 485 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 CDD recA 68 497 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 PANTHER RECA 66 517 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 Pfam recA bacterial DNA recombination protein 71 316 IPR013765 GO:0003697|GO:0005524|GO:0006281
Lsi04g01865 524 ProSitePatterns recA signature. 276 284 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lsi04g01865 524 Gene3D - 98 322 IPR027417 -
Lsi04g01865 524 PANTHER MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 66 517 - -
Lsi04g01865 524 SUPERFAMILY RecA protein, C-terminal domain 442 495 IPR023400 -
Lsi04g01865 524 Gene3D - 441 497 - -
Lsi04g01865 524 ProSiteProfiles RecA family profile 2. 262 315 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01865 K03553 recA; recombination protein RecA - csv:101216994 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01865 Lsi-Chr4:25777554 Lsi11g00184 Lsi-Chr11:1906147 5.00E-59 dispersed
Lsi04g01865 Lsi-Chr4:25777554 Lsi06g00291 Lsi-Chr6:3341779 1.18E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009642 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01865 Lsi_Chr04 FPKM 1.077922 0.0 2.900598 2.973001 2.292917 2.078491 4.673428 0.895029 1.961774 1.489185