Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01868 ATGGCTACTGGTTTTCGCGGCAATGGTAGTAGCAGTTGCAAGTACAAGTGCGACACTGCTGCCAATACTCGGCAATGGATAATGGCCATCGTCGATTTTATCAAACCTTACTCGTTCTTGATTAATGCTCCCGTCGTCAATTTCTTCAAGGATAGACTATGGGAAGCTGTTGATGAGGAATGGATGGAGTGCTTGCGCAAGGAACCTGTGGAAAATCTGCTCCTAATTCCTTCTGGAGTTGTCCAGGAAAACTGGCCAGATTCACTAAAGAAATTTATCCGTACTTTAGGATCTCTTGCCTTTCAACGTGAACAAGCAGACTTGCAGATGGTTCTACCTGGTTGGTGCATGACTTCGCTTAACACGGTTCTTTCTCAAGGCATGAATCAGAAGAAAAAACATGAAGTTGAAGTCCTTTCTGCCATTGTTAGTTTGATTGTAAGTGACCTGAAAAGTCGTGCAATTGTTGATGTTGGTGCTGGTCAGGGTTATTTAGCACAAGTGCTCTCCTTCCATTACAAGCATTCAGTTCTTGCAATAGATGCTTGTTCCCATCATGGAAATGTGACAAGTGCACGCTCAACGCGGATTAAGAAGTATTACTTAGCTCAGATTCGTAAATCTGGGTTGGAAGCCAAAAATTTGAGACTGCCGAAGGCAATGACATTTCATGTGTTGTCCGTTGATGCATTAAAATCCCTGGCTAACATGTCACTACAAGATGATCATGTTGAGAAGACAAGTATGACTGGTGATGATCAAGAGAGAACCAATCGGCAGGAGTCAAAGTCTTTGACTTTGGGCAATTCAGACGAAGAGCCTTCATTGGTTCTTGCTGGTCTTCATGCTTGTGGTGATCTTTCGGTGATAATGCTTAGGACTTTTGTAGAGTGCAAGGAAGTAAAAGCAGTCATTAATATTGGTTGCTGTTACAACCTTCTCACGGAGTATGGATCTGACAATGAGGCTGTCCAGAATGGATTTCCAATGAGCTTGGGTGTCAAATCTTCTGGCTTGTCTCTGGGGAAAAGTGGCAGAGACCTTGCATGTCAGAGTGCAGAAAGATGGAGGAATTTGGAGAATGAGGGTGGTCTCCATAATTTTGAGTTGCATGCTTTCCGTGCTGCTTTCCAAATGGTACTCTATAAACATTATCCAGAAGTGGTTGCAACTTGCCCTTCTGTTGGGCGTCAAGGAAAGGCATTGCGCCGTCGCAAGAAAAGGGAGAGTACAGTATCCTCACGGTGCCATGAAGAAAAGCTTGAGGCATCACAATCAGATCTTTTTGGGGGGTTGCCAGTCAACAACAATGCCTTTTCTCCTACTATTTTGGACCATGGGAGTACGCCTTGTGAACAGTTCAAATCTGTTGACAAATATCCTCTTTTCGAAAAGTTTTGTCAATCTGGATTAAATCGCCTTGGACTTCAAGCTTTGCAGGATATGGATTATTATAGAATCTGGGTGGACACTGAGCCTTTTACTGAATTTATTGGGCCTTACTGGTCTCTTCGAGCTGCTCTGGGCCCAGTATTGGAAACATGTATTCTGCTTGACAGATTGCTATTTCTCCAGGAGCAAGGTGGCTGCCTTGAAGCTATACTGCTACCTATTTTTGACCCGAATTTATCTCCGAGGAATGTGGCTATAATCGCTAGGAAAGTTGGTGCAACATAA 1677 43.59 MATGFRGNGSSSCKYKCDTAANTRQWIMAIVDFIKPYSFLINAPVVNFFKDRLWEAVDEEWMECLRKEPVENLLLIPSGVVQENWPDSLKKFIRTLGSLAFQREQADLQMVLPGWCMTSLNTVLSQGMNQKKKHEVEVLSAIVSLIVSDLKSRAIVDVGAGQGYLAQVLSFHYKHSVLAIDACSHHGNVTSARSTRIKKYYLAQIRKSGLEAKNLRLPKAMTFHVLSVDALKSLANMSLQDDHVEKTSMTGDDQERTNRQESKSLTLGNSDEEPSLVLAGLHACGDLSVIMLRTFVECKEVKAVINIGCCYNLLTEYGSDNEAVQNGFPMSLGVKSSGLSLGKSGRDLACQSAERWRNLENEGGLHNFELHAFRAAFQMVLYKHYPEVVATCPSVGRQGKALRRRKKRESTVSSRCHEEKLEASQSDLFGGLPVNNNAFSPTILDHGSTPCEQFKSVDKYPLFEKFCQSGLNRLGLQALQDMDYYRIWVDTEPFTEFIGPYWSLRAALGPVLETCILLDRLLFLQEQGGCLEAILLPIFDPNLSPRNVAIIARKVGAT 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25809788 25829141 - Lsi04G018680.1 Lsi04g01868 661917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01868 558 PANTHER CGI-41 METHYLTRANSFERASE 10 554 - -
Lsi04g01868 558 MobiDBLite consensus disorder prediction 245 260 - -
Lsi04g01868 558 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 10 554 - -
Lsi04g01868 558 MobiDBLite consensus disorder prediction 242 270 - -
Lsi04g01868 558 Pfam Methyltransferase domain 131 316 IPR025714 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01868 - - - bhj:120087081 1026.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g969 . . . . . . . . . . . Cma09g00747 . Car09g00655 . . . . . . . . . . Cla11g01589 Cam11g1656 Cec11g1684 Cco11g1681 Clacu11g1813 Cmu11g1627 Cre11g2043 Cone6ag0286 Cone9ag0321 . . Lsi04g01868 . . Cme07g00762 . . . . . . . . . . Cmo09g00739 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003084 1 15 1 1 1 0 2 0 0 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01868 Lsi_Chr04 FPKM 24.19516 26.088087 6.072502 5.546453 9.268636 10.576825 10.223879 0.574942 1.109628 0.639522