Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01869 ATGGCTTCCGCTTGCGTCAAGAACGTCGGAATACCATCGGAGAGCTTCCTCGACGGCTCACGGGCCGCCTACACTTCTTACGGTTGGTTGAGCCCTCGCGCATCCTTCAGTCGCGAGTATCCCGACGAATCATCCGCCAAGCTCTCCGGTTTCAATCTCAGTCCCTCCTCCATTAGCAATACTCCTCAGGCGAGTAAGCCGGCGATTTCAGGTACGGATGTGGAAGGTTCAGCTAGTGATTTCGAGTTTAGGCTGGAAGATCCTGTGACTCTGATTCATGCCGATGAGCTCTTTTTCGACGGAAAGCTCGTGTCGCTGCAGCTTCCGTCGGTGAAATCGTCGGTCAAGAAACTCTCCTCAACGGATATCGGATCGCGGTCACCTGATACAATGACGCCGCGGAGCGTGACGGATATCGGTAATGTTGAACCGTACTCTTTTTCTCCTCGTGCTCCGAGGTGCTCGAGTCGCTGGAGAGAGCTTCTAGGGCTGAAGAAGGTTAGTCAAATGACTATTACAATAACGAAGAATGAAAATCAGAAAACGGAGTTGTCTTCATCATCGAGCACGAGAATGAAATCTCTGAAGCAATTTCTCCACAGGAGTTCCAAACTCGTACCCTCCGATTCCTCAGAAACTCTAAATCATCCGCTATTGAAAGATTTGGATTACGAGTCAGTTACCATATCCTCTTCTCGCCTCTCCCTTTCTTCCTCATCCTCTGGTCATTCACAGGACGATCTCCCTAGATTCTCACTCGATTTCGACAAGCCATCAAAATTCAATAAAGAATCGAACAATCGGATCAATACGGTGAAGACGAGAGCATCGCGATCAGAAGCGAAGAGAGTAGGGCGGAGTCCGGTCCGTCGGGCGCCAGGGGAATCAGGTAGAGTAAGAAGCAGAGAAGTATCCATGGACAGTCCGAGAATGAACTCCTCCGGGAAAATAGTGTTTCAAAGTCTGGAAAGGAGTTCGAGTAGTCCGAGTAGCTTCAATGGCGGACCAAGATTGAAGCACAGCGGAATCGAAAGGTCATACTCCGCGAATGTGAGAGTGCCGCCGGTGCTGAACGTTCCGGTGAGTTCGCTGAGGGGATCATCAAAATTCGGGTTCAGCCAGTTGTTTTCCTTCCCGCAGAAGAGAACCGACGCTACTTACGGCGGCAAAGGCCATACGAGACACTGCAGAAACTGGATCGTTCGAGCGTGA 1212 50.66 MASACVKNVGIPSESFLDGSRAAYTSYGWLSPRASFSREYPDESSAKLSGFNLSPSSISNTPQASKPAISGTDVEGSASDFEFRLEDPVTLIHADELFFDGKLVSLQLPSVKSSVKKLSSTDIGSRSPDTMTPRSVTDIGNVEPYSFSPRAPRCSSRWRELLGLKKVSQMTITITKNENQKTELSSSSSTRMKSLKQFLHRSSKLVPSDSSETLNHPLLKDLDYESVTISSSRLSLSSSSSGHSQDDLPRFSLDFDKPSKFNKESNNRINTVKTRASRSEAKRVGRSPVRRAPGESGRVRSREVSMDSPRMNSSGKIVFQSLERSSSSPSSFNGGPRLKHSGIERSYSANVRVPPVLNVPVSSLRGSSKFGFSQLFSFPQKRTDATYGGKGHTRHCRNWIVRA 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25837982 25839193 - Lsi04G018690.1 Lsi04g01869 661918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01869 403 MobiDBLite consensus disorder prediction 47 72 - -
Lsi04g01869 403 MobiDBLite consensus disorder prediction 44 73 - -
Lsi04g01869 403 MobiDBLite consensus disorder prediction 234 314 - -
Lsi04g01869 403 MobiDBLite consensus disorder prediction 275 305 - -
Lsi04g01869 403 PANTHER NUCLEAR PORE COMPLEX PROTEIN DDB_G0274915-LIKE 1 380 - -
Lsi04g01869 403 MobiDBLite consensus disorder prediction 249 263 - -
Lsi04g01869 403 PANTHER OS06G0675200 PROTEIN 1 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01869 - - - cmax:111480353 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01869 Lsi-Chr4:25837982 Lsi07g00829 Lsi-Chr7:9226400 1.19E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g976 . . . . . . . Bma13g00896 Cmo16g00506 Cmo04g00682 Cma01g01298 Cma09g00746 Car01g01106 Car09g00654 . . Cpe02g00632 . . . . . . . Cla11g01590 Cam11g1657 Cec11g1685 Cco11g1682 Clacu11g1814 Cmu11g1628 Cre11g2044 . . . . Lsi04g01869 . . . . Blo10g00684 . Bda12g00778 . Bpe03g00880 . . . Cmo01g01351 Cmo09g00738 Cma04g00633 . Car04g00592 Car16g00422 Cpe14g00394 Cpe01g00570 . . . . . . . Cla07g01012 Cam07g1089 Cec07g1161 Cco07g1139 Clacu07g1063 Cmu07g1054 Cre07g1430 . . Chy07g01048 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002398 2 1 1 2 2 1 4 2 1 1 2 2 3 1 1 4 2 2 4 2 1 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01869 Lsi_Chr04 FPKM 0.0 0.0 0.256794 0.219307 5.742184 7.074809 5.067207 0.0 0.065886 0.08409