Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01870 ATGCACAGTCCGGAGAAATTGGATGAAGATTATTCTGCCAATGAGGACAGCAACCTCTCGGCTGAATTAGGGACTTCCATTAGTCCCAATGGTGATCTCCAGGAAGGAAATGGTTGTGAAAATAAGAACTTGGGGAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATTATAAGGGATTTTGACTCCAAAGCTGGTGATACTCTTAAAAGCCAGAGCGAGCTTTCATCTTCCCTTGATCAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGAACCATACAACGAAGAGTGGATAACATAGATCGGGCAATCTCGATGGGCAATCTACCAGGTGATTGA 426 41.78 MHSPEKLDEDYSANEDSNLSAELGTSISPNGDLQEGNGCENKNLGNSNALANGLSSMLINIIRDFDSKAGDTLKSQSELSSSLDQLDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAISMGNLPGD 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25843833 25845116 + Lsi04G018700.1 Lsi04g01870 661919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01870 141 MobiDBLite consensus disorder prediction 1 40 - -
Lsi04g01870 141 PANTHER SNARE-ASSOCIATED PROTEIN SNAPIN 3 137 IPR017246 GO:0006886|GO:0031083
Lsi04g01870 141 MobiDBLite consensus disorder prediction 14 40 - -
Lsi04g01870 141 Pfam Snapin/Pallidin 49 129 IPR028119 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01870 - - - bhj:120085558 208.764
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g987 . . . . . . . . . . Cma01g01299 Cma09g00745 . . . . Cpe02g00631 . . . . . . . Cla11g01591 Cam11g1659 Cec11g1687 Cco11g1683 Clacu11g1816 Cmu11g1629 Cre11g2045 . . . . Lsi04g01870 . . Cme07g00760 . . . . . . . . . Cmo01g01354 Cmo09g00737 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003765 0 7 1 1 1 0 2 0 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 7 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01870 Lsi_Chr04 FPKM 20.314264 21.569727 17.288847 17.869453 49.992893 43.842392 48.134052 8.584676 8.187512 8.245643