Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01876 ATGCAGATTGAGAAAAGATTAGAGAAGCTCAAGAAAGGCAAGGCAAAGGATTCTCAGTCTAGAGTCAAGGAAGAAGCAGAGAAGTCTGCATTGGAAAAAATTCAGAAGGTCCTTCTGGATGGAAAACCAGCGCGATCAGTAACTTTAACAGATTTTGAAAAGGATGCTATAAAGCATCTTTGCCTGCTCACAATGAAACCGGTCATATATGTGGCCAATGTTGCAGAATCTGATCTAGCGGAGCCTGCAAGTAATCCTCACGTTAAAGAAGTTATGGGTCTTGCATCAGAGTTGCAATCTGGAATAGTGACAGTTTCTGCACAGGTTGAGTCTGAGCTTTCTGAACTTCCGTCAGAAGAGAGGTTTGAATATTTAAAATCTCTTGGTGTAAGTGAAAGTGGCCTGGGAAATCTTATAAGGGCAACCTATAACCTATTGGGACTCCGTACATATTTTACTTCGGGTGAAAAGGAAACAAAAGCCTGGACCATCCTTGCAGGAATGACTGCACCGCAAGCTGCTGGAGTTATTCACTCAGACTTTGAGAGAGGGTTCATCCGTGCAGAGACGGTGGCTTATGATGATTTTGTTGCTGCGGGTTCATTTGCAGCAGCAAGGGAGAAAGGACTTGTCGAAGACTTGCAGTTGATTTATCATTTTGATGTTTTTGGGAATTCTCATTGTTTGGGTTCGTCTTTTGTTGGTCAGTGGGAGCCAGAACCAGTGATAAAGGAGGCTCAAAATCTAGCATTGGCTAGCAAGGTTGACGGCAGCTCCAACTCATCGAACGACACCCCATGTGGAAATTTCCCAAGATCTATGGCCTTGTAG 831 43.8 MQIEKRLEKLKKGKAKDSQSRVKEEAEKSALEKIQKVLLDGKPARSVTLTDFEKDAIKHLCLLTMKPVIYVANVAESDLAEPASNPHVKEVMGLASELQSGIVTVSAQVESELSELPSEERFEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILAGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFAAAREKGLVEDLQLIYHFDVFGNSHCLGSSFVGQWEPEPVIKEAQNLALASKVDGSSNSSNDTPCGNFPRSMAL 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25891276 25898028 + Lsi04G018760.1 Lsi04g01876 661925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01876 276 SUPERFAMILY TGS-like 148 211 IPR012676 -
Lsi04g01876 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 170 IPR027417 -
Lsi04g01876 276 MobiDBLite consensus disorder prediction 1 25 - -
Lsi04g01876 276 Gene3D - 133 218 IPR012675 -
Lsi04g01876 276 Gene3D - 1 66 IPR023192 -
Lsi04g01876 276 PANTHER OBG-LIKE ATPASE 1 2 211 - -
Lsi04g01876 276 MobiDBLite consensus disorder prediction 254 269 - -
Lsi04g01876 276 Pfam Protein of unknown function (DUF933) 148 212 IPR013029 -
Lsi04g01876 276 MobiDBLite consensus disorder prediction 254 276 - -
Lsi04g01876 276 PANTHER OBG GTPASE FAMILY 2 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01876 K19788 OLA1; obg-like ATPase 1 - csv:101217443 379.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01876 Lsi-Chr4:25891276 Lsi02g00946 Lsi-Chr2:9404319 5.06E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g990 . . . . . . . . . . Cma01g01304 Cma09g00739 Car01g01111 Car09g00649 . . Cpe02g00628 . . . . . . . Cla11g01598 Cam11g1664 Cec11g1693 Cco11g1689 Clacu11g1822 Cmu11g1634 Cre11g2050 Cone6ag0279 Cone9ag0315 . . Lsi04g01876 . . Cme07g00745 . . . . . . . . . Cmo01g01359 Cmo09g00731 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004300 2 4 0 0 1 0 1 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 7 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01876 Lsi_Chr04 FPKM 8.951697 10.497648 10.708817 10.09667 10.084324 10.442904 10.836261 13.493925 12.564944 14.138047