Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01878 ATGGAGCAGACAAGACACAATAGGAGGATCAACTGCTCTGGTTCAACTCCATCCGAAGAATCAGCGCTGGATCTTGAAAGAAATTGCTGCAGTCACTCTGATTTACCTTCTTTCAGCTCACCTACGCTTCAGCCGTTTGCATCTGCTGGACAGCATTTTGGGTTCAATACTGCTTACTTTTCATGGCCCACCCCTATCCGGTTGAGCGTTGGTACAGAGGAAAGGGCAAATTATTTTGCAAATCTTCAGAAAGGGGTGCTGCCAGATATTCTTCATCCGTTACCAAAAGGGCAGCGGGCAAACACATTACTCGAGCTCATGACAATAAGAGCCTTCCATAGCAAGATCCTGCGTTGTTACAGTCTTGGAACGGCAATTGGATTCCGTATTCGAAAGGGCGTGCTGACTGATATTCCTGCTATTCTTGTTTTTGTTTCCAGGAAAGTTCACAAGCAATGGCTTAGTCCTATCCAATGCCTGCCCACTGCCTTGGAGGGGCCAGGTGGTGTGTGGTGCGATGTGGATGTTGTTGAATTCTCATATTTTGGTGCACCCAACCCTGCTCCTAAAGAACAGTTGTACACTGAAATTGTCGATGATCTGCGCGGCTCTGATCCATGCATTGGCTCTGGTTCTCAGGTGGCCAGCCAGGAGACCTATGGAACCTTGGGCGCTATAGTAAGAAGTCAAACGGGCAGTCGACAAGTTGGTTTTCTCACAAACCGTCATGTAGCAGTCGATTTAGATTATCCTAATCAGAAAATGTTTCACCCTCTTCCACCGACACTTGGGCCGGGGGTGTATCTTGGTGCTGTGGAGAGAGCTACATCATTTATCACTGACGAGCTCTGGTACGGAATTTTTGCTGGAATAAACCCAGAGACGTTCGTCAGGGCAGATGGGGCATTTATTCCTTTTGCTGATGATTTTGACATGTCAACTGTCACTACATCTGTAAAAGGCGTGGGAGAGGTTGGTGACGTGAAGTTTATTGACTTGCAGTCGTCTATCAGTACCCTTATAGGGAAGCAGGTGGTGAAAGTTGGAAGAAGTTCTGGCTTGACTACAGGAACTGTTTTGGCCTATGCTCTTGAGTACAATGATGAGAAAGGAATATGCTTTTTAACCGATTTTCTCGTTGTAGGTGAGAATCAACAGACTTTCGATCTCGAAGGAGATAGTGGAAGCCTCATCATTTTAAAGGGTGAGAATCGAGAGAGTTTGCAACCAATTGGGATCATATGGGGTGGAACTGCTAACCGAGGTCGGCTTAAGTTGAAAGTTGGCCAACCTCCTGAGAATTGGACGAGTGGCGTTGATCTTGGGCGCCTTCTCAATCTGCTTGAACTTGATCTAATCACAAGTGATGAAGGGCTCAAAGCGGCAGTACAAGAGCAAACAACTGTATCGGCAACCATTATCGGGTCGATTGTTGGAGACTCCTCTCCTCCTGATACAACACTGCCAAAGGAGAAGAGTGAAGAGAAGTCTGAGCCATTGGGTTTTCAGATCCAGCATATGCCTATAGAAGTAGAGCCTTCTTCAGCTAAAGACCGGCCGCTCCTGGAGACGGAGTTTCATCTTGAACCCGGGATGAACATGGCTCCCAGCGTCGAACATCAGTTCATTCCAAGCCTTTTCAGTTGCTCTCCCTCCCATCAAAACAGCATTCTGGACCGTGCCGTTTCTCAAAACCTATCTTCGCTCCGAAGCGACTGCGAAGACCCTTGCGTTTCCTTGCAACTGGGCGACCACGAAGCCAAGAGACGACGCTCAGATGCTTCTGTTTCCATGGAAGAACTGAAATAG 1809 47.48 MEQTRHNRRINCSGSTPSEESALDLERNCCSHSDLPSFSSPTLQPFASAGQHFGFNTAYFSWPTPIRLSVGTEERANYFANLQKGVLPDILHPLPKGQRANTLLELMTIRAFHSKILRCYSLGTAIGFRIRKGVLTDIPAILVFVSRKVHKQWLSPIQCLPTALEGPGGVWCDVDVVEFSYFGAPNPAPKEQLYTEIVDDLRGSDPCIGSGSQVASQETYGTLGAIVRSQTGSRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGAVERATSFITDELWYGIFAGINPETFVRADGAFIPFADDFDMSTVTTSVKGVGEVGDVKFIDLQSSISTLIGKQVVKVGRSSGLTTGTVLAYALEYNDEKGICFLTDFLVVGENQQTFDLEGDSGSLIILKGENRESLQPIGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLNLLELDLITSDEGLKAAVQEQTTVSATIIGSIVGDSSPPDTTLPKEKSEEKSEPLGFQIQHMPIEVEPSSAKDRPLLETEFHLEPGMNMAPSVEHQFIPSLFSCSPSHQNSILDRAVSQNLSSLRSDCEDPCVSLQLGDHEAKRRRSDASVSMEELK 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25915049 25922267 + Lsi04G018780.1 Lsi04g01878 661927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01878 602 PANTHER BNAA01G30180D PROTEIN 1 601 - -
Lsi04g01878 602 MobiDBLite consensus disorder prediction 476 499 - -
Lsi04g01878 602 PANTHER EXPRESSED PROTEIN 1 601 - -
Lsi04g01878 602 SUPERFAMILY Trypsin-like serine proteases 214 425 IPR009003 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01878 - - - csv:101217211 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00018 Lsi-Chr1:234847 Lsi04g01878 Lsi-Chr4:25915049 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g991 . . . . . . . . . . Cma01g01305 Cma09g00737 Car01g01113 Car09g00647 . . Cpe02g00626 . . . . . . . Cla11g01600 Cam11g1666 Cec11g1695 Cco11g1690 Clacu11g1824 Cmu11g1636 Cre11g2051 Cone6ag0278 . . . Lsi04g01878 . . . . . . . . . . . . Cmo01g01362 Cmo09g00729 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007800 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01878 Lsi_Chr04 FPKM 1.003611 0.616428 1.277604 1.082028 1.655403 2.173523 2.109528 1.750068 1.560525 1.757073