Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01880 ATGGCAGGCAATGGCCTGCCATCATTGGGTCGTGTGAAGCTTACCGATATAGCACCATCTGAAGGAGTTCCTTCTGAGTCTTTCAAATTGTCGGTCTCAACTCTATCACATTCACTAGCTCAATACTCTGCTGCCATCATTCAATTCCCTGCTTGTGATGGGGCTCTTTTAAGGTCCGGTTTAGATTCTGCTCGTCTCTACTTCCACCAGAGGGCTGCATGTTCATCTGCTGAGTTGATGCAAAACAATGATTCACGGGAGTGGTGCAGAACTTCTGGTTACTATGTGGATGCTCAGATGTGGCAAGAAACATATGATTATAGGCCTGGATTGACTCCAGTTGAGCCCAGCAATGGAATGGAGTTACAACCTGCGGGTTTGCCAGACATTTTTGCTCTCTATGGAAAGGCATCTCGAATTATTTTGGATGCCATCAGCTTCTACCTAAACTTGCGCAGCTCTCCTTTCACGGAAATACTTGATAATGTCCCCCTAAGAAGCAGGGAGATATCATCTTCTGTGTTGTCTGTGTGCTGTTATGGGAGACCCTCATTTCATGGAGAGCATCACCATAAACTAACTGCTCAAGAGGATAGCCAGTTGGCTATGTATGCATCGGACCATGACCATCAAATTGATAAAAGTCTTATTACTCTGGTCAAGTCGGATAAGGCAGGTTTACTAATAAAGGATTTCAATGGTAGATGGATTCTTGTGGATGGTGATCTTGGCCCTCAAGATGCTATAGTTTATCCTGGACTTGCACTCTATCAAGCAACTGCGGGGTATGTGAATCCTGCTTTGCTCAGAACAGATGTGAATAATATTCAAGGTAGTATGTATGGACGGTGTTCCTTATCATTCAAACTCATGCCTAAATCCATGACTAGCCTCAGTTGTTCAGAAATGAGAGCAGCTGGCCATGGGGTAGATGTTCAGTTCCAGCTTCCAGTACCAGTGGATGACTTTATGCAGAGATCACACTCAACTGACGAACTTTTTAACCGCCCAAATTTCCAGAATTTCAGTTTCTCTACATCACAAGATGGATCCATAAAAATGAGGAGGAGAAAGAATAATTCAAGTACCAAACCTCTACCCCCTTCTAAGAGATTACGGCTTGAGGCACAGAGAGTTCTGAAGGAGAAAGTACAGGATATTGCAGATAAGAAGGGTATCAAATTGAGGTTCTGTAATCTGAAGGATTGTGAGAGTCACATTCACACATTAGATAGCCCTTGTGCCAGCACAAGAATGGAGATTGGATGGCCTCCTGGAGTGCCGTTCGTTCATCCTCACGATCTACCTAATAAGGCAAAAATTGGTTTTCTTGAAGCTTACGAGCCTGGTTGGACAGCTAGTCATGACGTTGAATTAAGTCTTACTGAACCTGGGCAAGTGGGTCAACAGTCAACCAACTGA 1422 44.02 MAGNGLPSLGRVKLTDIAPSEGVPSESFKLSVSTLSHSLAQYSAAIIQFPACDGALLRSGLDSARLYFHQRAACSSAELMQNNDSREWCRTSGYYVDAQMWQETYDYRPGLTPVEPSNGMELQPAGLPDIFALYGKASRIILDAISFYLNLRSSPFTEILDNVPLRSREISSSVLSVCCYGRPSFHGEHHHKLTAQEDSQLAMYASDHDHQIDKSLITLVKSDKAGLLIKDFNGRWILVDGDLGPQDAIVYPGLALYQATAGYVNPALLRTDVNNIQGSMYGRCSLSFKLMPKSMTSLSCSEMRAAGHGVDVQFQLPVPVDDFMQRSHSTDELFNRPNFQNFSFSTSQDGSIKMRRRKNNSSTKPLPPSKRLRLEAQRVLKEKVQDIADKKGIKLRFCNLKDCESHIHTLDSPCASTRMEIGWPPGVPFVHPHDLPNKAKIGFLEAYEPGWTASHDVELSLTEPGQVGQQSTN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25934864 25938938 + Lsi04G018800.1 Lsi04g01880 661929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01880 473 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 1 472 - -
Lsi04g01880 473 MobiDBLite consensus disorder prediction 345 369 - -
Lsi04g01880 473 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 1 472 - -
Lsi04g01880 473 Gene3D - 25 330 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01880 - - - csv:101216737 948.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01880 Lsi-Chr4:25934864 Lsi11g00124 Lsi-Chr11:1410273 6.74E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g999 . . . . . . . . . . Cma01g01308 Cma09g00735 Car01g01115 Car09g00645 . . Cpe02g00624 . . . . . . . Cla11g01603 Cam11g1668 Cec11g1697 Cco11g1691 Clacu11g1825 Cmu11g1638 Cre11g2052 Cone6ag0277 Cone9ag0314 . . Lsi04g01880 . . . . . . . . . . . . Cmo01g01364 Cmo09g00727 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004223 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01880 Lsi_Chr04 FPKM 0.181384 0.476167 0.0 0.0 3.884675 4.064538 3.815541 0.0 0.0 0.0