Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01901 ATGACGTCAAGTATTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAATCTGATGAAGGAATAGTTGTCCGAGAAGTCTGTGCAAATGGGATCTGCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTCGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCCATTCAGCGATTACAGCCTTGTGTTGCTGAGAAGACGCCTCCAAAAAAAGGACGTACGCGTACTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTGGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAATGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTTCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAATAATGAAAGCTGTGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAGTATTTGCTCTATCCTTATGCAGTCAGACATCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCAGGCCAGAATAAAGTTGCCTTAAATCTTCTGAGAAAGTGTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTTGCTGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAGCAATTCTATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGCTTGTTAGGTCTTTGTTTGGGGCAACAAGCCAAAATGTCTTCCTCTGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAATATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTCATTGATGAAACTGGTGGCTCTGTCTTAAAGGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCAGAGGCAGAAGTGGTCACTGATGCTGCAATGGACGAGACCACAAAATGGGAACAAGGACCACTTCTCAGACTCAAGGCAAAGCTGAAGGTCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAAAAATCATTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAATTTGAAGTGTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCCGAGATATGTCTAATGTGTGAAGGACGTGAGCAAATACAAGAAGCTCTAGCTGCTTATATTAATGCTCTCCTACTCGAACCATGCTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCAGATGCATTGCCTATAGCAAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCCACCAACCGTAAGGCTTGGTTTTACTTAGGGGTCATTCATAGGGACGAAGGACGAATGGCCGACGCCATAGACTGTTTCCAGGCAGCCGCTATGCTTGAAGAAACAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2070 43.62 MTSSIDEDDREPAMESGESDEGIVVREVCANGICIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCVAEKTPPKKGRTRTESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLVFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKCLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMSNSIENEEHLKGVGLRLLGLCLGQQAKMSSSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLMCEGREQIQEALAAYINALLLEPCYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEETDPIESFSSIL 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26172695 26179168 - Lsi04G019010.1 Lsi04g01901 661950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01901 689 SUPERFAMILY TPR-like 589 681 IPR011990 GO:0005515
Lsi04g01901 689 PANTHER CALMODULIN-BINDING PROTEIN 14 688 - -
Lsi04g01901 689 Gene3D Tetratricopeptide repeat domain 586 684 IPR011990 GO:0005515
Lsi04g01901 689 Gene3D Tetratricopeptide repeat domain 291 585 IPR011990 GO:0005515
Lsi04g01901 689 SUPERFAMILY TPR-like 316 581 IPR011990 GO:0005515
Lsi04g01901 689 SMART tpr_5 647 680 IPR019734 GO:0005515
Lsi04g01901 689 SMART tpr_5 316 349 IPR019734 GO:0005515
Lsi04g01901 689 SMART tpr_5 472 505 IPR019734 GO:0005515
Lsi04g01901 689 MobiDBLite consensus disorder prediction 1 21 - -
Lsi04g01901 689 ProSiteProfiles TPR repeat profile. 647 680 IPR019734 GO:0005515
Lsi04g01901 689 Pfam Tetratricopeptide repeat 632 674 - -
Lsi04g01901 689 Gene3D Tetratricopeptide repeat domain 38 218 IPR011990 GO:0005515
Lsi04g01901 689 PANTHER PROTEIN NPG1 14 688 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01901 Lsi-Chr4:26172695 Lsi05g01037 Lsi-Chr5:17918214 5.77E-173 dispersed
Lsi04g01901 Lsi-Chr4:26172695 Lsi05g01751 Lsi-Chr5:24912925 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01901 K21843 - csv:101206641 1296.18