Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01927 ATGGCAATGGCGGATTTCAAGCTTCATCGTCTTCTTCTTTCTTTCCTCTTTCTATTTCTTCTACTCATTCCTTCCGTAATCGCAGCAGCAGAGGATTGCCAATGTTCTGAAGATGCAGAGGAAGACAAAGGGAAACGAAACGCAACTTTAGCTATGAAATACAAAATCATCGCCATAGCTACGATTCTCGTAGCCGGAATTATCGGAGTGGTGATTCCTTTGCTTGGGAAGGTGATTCCGGCATTAAGTCCGGAGAAGGATATTTTCTTTGTGATTAAAGCTTTTGCTGCTGGAGTTATATTAGCTACTGGATTCATTCATGTTCTTCCTGATGCTTATGAGAATCTCACATCGACGAAATTGAAAGAGGATCCATGGGGGAAGTTTCCGTTCACTGGTTTAGTGGCTATGGTGGCGGCGATGGCTACTTTGATGGTGGATGCCGGTGCCAGCTCTTATTATACTCGGATTCATCTTAATAAAGCTCAGCCTGAGTTGAATGAAGATGATGAAATGCGCGGCGGTGCTCATGATGGGCATGTTCATGTTCATACTCATGCCACTCATGGCCATGCTCATGGCTCCGCCGATGTCGTCGGTTCATCCACCGAGATTCTCCGCCACCGTGTCATTTCTCAGGTATTGGAGTTGGGGATAGTGGTACATTCGGTAATTATAGGAATTGGTTTGGGCGTTTCTGAAACTCCGAACACAATAAGACCTCTTGTGGCCGCCATCACTTTTCATCAGTTATTTGAAGGCATGGGCCTCGGCGGATGCATTGCACAGGCAAAATTCAAGAACCGAGCAACAATAATAATGGGTCTTTTCTTTTGTTTGACAACACCAATTGGGATAGCAATAGGGATTGGAGTAACCAAGACTTATGATGAAGATAGCCCAAAAGCATTAATAGTTGAAGGAATTTTGAATGCAGCTTCTTCTGGTCAATAG 954 44.23 MAMADFKLHRLLLSFLFLFLLLIPSVIAAAEDCQCSEDAEEDKGKRNATLAMKYKIIAIATILVAGIIGVVIPLLGKVIPALSPEKDIFFVIKAFAAGVILATGFIHVLPDAYENLTSTKLKEDPWGKFPFTGLVAMVAAMATLMVDAGASSYYTRIHLNKAQPELNEDDEMRGGAHDGHVHVHTHATHGHAHGSADVVGSSTEILRHRVISQVLELGIVVHSVIIGIGLGVSETPNTIRPLVAAITFHQLFEGMGLGGCIAQAKFKNRATIIMGLFFCLTTPIGIAIGIGVTKTYDEDSPKALIVEGILNAASSGQ 317
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 26474606 26477926 + Lsi04G019270.1 Lsi04g01927 661976
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01927 317 TIGRFAM zip: ZIP zinc/iron transport family 39 316 IPR004698 GO:0005385|GO:0016021|GO:0071577
Lsi04g01927 317 Pfam ZIP Zinc transporter 54 316 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lsi04g01927 317 PANTHER ZINC/IRON TRANSPORTER 28 316 - -
Lsi04g01927 317 PANTHER ZINC TRANSPORTER 12-RELATED 28 316 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01843 Lsi-Chr2:24208141 Lsi04g01927 Lsi-Chr4:26474606 3.45E-10 dispersed
Lsi04g01927 Lsi-Chr4:26474606 Lsi11g01590 Lsi-Chr11:24288182 9.53E-104 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01927 K14709 - csv:101215851 480.33