Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01952 ATGGAATGTTGTTTGTCGGTACAGGAAGTGTTAAGGAAGGCAATCTTTTCTTTCAATCGTAAAGTGGGATTTGGAGGAAGATTGATTCTAATGGAGGTTTCGATTATGATTCATGTGGGATTTGTCCTTTTTCTTCTCTGGCTACTTTCCGCCTTCAATTGCTGCCATCTTGCCGCATATTTCATCTCCCTCATCTATCTCTATCTGGTGCACGAGCGGTTCTTTTTGAAACTGAGGAGGAAATTGCAGTTTGAGGAGAGAAAGCAAGCTAACCAGAGAAGGGTGGAACTTCTTTCCCTCTCTTACATAGAATTCATAAACAAACTACAAATTGTGATTTCTCTTCCACTTCAGGTTCTCACAGATTCTGAAACAGTTAGGTGGTTAAACCATGCGGTTGAAAAGATTTGGCCTATATGCATGGAGCAAATTGCTTCTCAGAAGATTCTCCTCCCTATCATTCCTTGGTTCTTGGAGAAGTACAAACCATGGACTGCTAAGAAGGCTGTGGTTCAACATCTATATTTGGGAAGAAACCCACCTATGTTTACTGAAATGAGGGTTCTTCGTCAGTCTAGCGAGGATGACCACTTGGTTCTGGAGTTGGGAATGAACTTTCTTACAGCTGATGACATGAGTGCAATACTTGGTGTGAAGCTAAGGAAAAGACTAGGATTTGGAATGTGGGCAAAGTTGCATCTTACAGGCATGCATGTGGAAGGAAAGGTTCTGGTTGGTGTTAAGTTCCTTCGGGATTGGCCATACCTAGGCCGTATTCGATTATGTTTTGCTGAGCCTCCATACTTTCAGATGACTGTCAAACCTATCTTTACGCATGGTCTTGATGTTACCGAACTTCCAGGGATTGCTGGATGGCTGGATAAGCTTTTGTCCATTGCCTTTGAGCAGACACTTGTTGAGCCCAATATGTTAGTTGTTGATATGGAGAAGTTCATTTCACCACAGCCAGAAAATTGGTTCTCTGTAAACGTGAAGGAACCAGTCGCTTATGTTATAGTCGAAGTTGTTGAAGGAGCAGACATGAAACCATCTGACCTAAATGGTCTGGCTGATCCGTATGTAAAAGGTCAACTGGGTCCTTACAGATTCAGAACCAAAATTCAAAGGAAAACACTATCTCCACAGTGGCACGAGGAATTCAAGATCCCAATTGTCACATGGGAGTCGGAAAATGTGCTTACTATTGAAGTTCGTGACAAGGACACGTTTGTCGACGACGTACTTGGAAATTGCTCTGTCTGCATTGCAGACCTGAGGGATGGCAAACGACATGATATATGGTTGCCTCTTGAAAACATTAAAACAGGGAGATTGCATCTTGGAATCACTGTTTTTGAAGACAGAAAGAAGGTGGAGGAATATCCTTCTCAGAGAGAAGCCTTGAATGTGGAAGAGGATAAGGATTCCCCTAAAAGTGAGACCAAGGATGATAAGAATTCAATCTCTCCTGTATCAATGGAGCCTCAAAGAGGGATTGATAATTTTGAGCCCATCGATGTTGAAGGGCAGAAGGAGACAGGAATCTGGGTCCACCGTCCAGGAAGCGAAGTTTCAAAAACTTGGGAGCCACGGAAGGGACGAAGTCGGCGGCTTGATACCGAAATCCATAGAGAGCCTAATGAATCTGTAAGCAGTGGTGAGATAAAATCTTGTATTAATGATTCAAGCAGTACTGATGATAATCCTGAGGAAAAACATCGAAAGTTATCAGTTCGCAGGGGACTAAGGAAGTTGAGTTCAGTTTTTCACAGGAGTCCTCGGGATGAGGATCGATCAGGAAGCTTAATGGAGTCTGCTAAATCCCCCCAATATGCTAATGTTAGGGCTGCAAATGCTGAGGGAGGCGTGAAGGTTATTCTTGTAGATAACATTTCCGGTACTGCTTCTGATAAGGTACCAAAAGAAGGGAAGTCGAGCAACGATGGTAGCGATTCAGAGAGTCCAGGAAAGGGTGGTAATGTGAAAGGCATGGCGAAAAGCCTTTTCAGACAGGCTGAGAAATCTGCTCGTACTATTAAATACGCATTTTCACGCAAAGGTTCGAGGAAATTCCGAAGCGATCCATTAGGAATGAATGAGAGAGATGCTGCAGTGGAATCAGAGTCTTCTGATGATGAACCTGATGCACCAGCTGCTTGCAGCCCAACGACAATTGTAGGAGTCCCAGTTATCCCTGAAGTCAAATCCCCAGCTCCTCACAACAAATCCTTGAAGAAGGAAAATGTGTTACCCACTGGTTCAAGTGACAATGTGAAGGAGAATGGACAATCAGCAGATAGAAGTACTGCTGCCGCTCACTTGGAAAAGATCGAAGATGACGAGGATGATAAACCTGCAATCAACGGTGGCAAATGA 2376 43.6 MECCLSVQEVLRKAIFSFNRKVGFGGRLILMEVSIMIHVGFVLFLLWLLSAFNCCHLAAYFISLIYLYLVHERFFLKLRRKLQFEERKQANQRRVELLSLSYIEFINKLQIVISLPLQVLTDSETVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVVQHLYLGRNPPMFTEMRVLRQSSEDDHLVLELGMNFLTADDMSAILGVKLRKRLGFGMWAKLHLTGMHVEGKVLVGVKFLRDWPYLGRIRLCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDMEKFISPQPENWFSVNVKEPVAYVIVEVVEGADMKPSDLNGLADPYVKGQLGPYRFRTKIQRKTLSPQWHEEFKIPIVTWESENVLTIEVRDKDTFVDDVLGNCSVCIADLRDGKRHDIWLPLENIKTGRLHLGITVFEDRKKVEEYPSQREALNVEEDKDSPKSETKDDKNSISPVSMEPQRGIDNFEPIDVEGQKETGIWVHRPGSEVSKTWEPRKGRSRRLDTEIHREPNESVSSGEIKSCINDSSSTDDNPEEKHRKLSVRRGLRKLSSVFHRSPRDEDRSGSLMESAKSPQYANVRAANAEGGVKVILVDNISGTASDKVPKEGKSSNDGSDSESPGKGGNVKGMAKSLFRQAEKSARTIKYAFSRKGSRKFRSDPLGMNERDAAVESESSDDEPDAPAACSPTTIVGVPVIPEVKSPAPHNKSLKKENVLPTGSSDNVKENGQSADRSTAAAHLEKIEDDEDDKPAINGGK 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26628252 26634686 - Lsi04G019520.1 Lsi04g01952 662001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01952 791 CDD C2 338 437 - -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 588 602 - -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 771 791 - -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 463 487 - -
Lsi04g01952 791 ProSiteProfiles C2 domain profile. 321 435 IPR000008 -
Lsi04g01952 791 SMART C2_3c 337 434 IPR000008 -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 747 768 - -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 463 500 - -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 687 705 - -
Lsi04g01952 791 Pfam C2 domain 338 437 IPR000008 -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 631 791 - -
Lsi04g01952 791 Gene3D C2 domain 322 453 IPR035892 -
Lsi04g01952 791 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 31 757 - -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 524 550 - -
Lsi04g01952 791 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 122 316 IPR031468 GO:0008289
Lsi04g01952 791 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 328 452 IPR035892 -
Lsi04g01952 791 MobiDBLite consensus disorder prediction 512 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01952 - - - csv:101218944 1327.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01181 Lsi-Chr2:14763259 Lsi04g01952 Lsi-Chr4:26628252 1.23E-06 dispersed
Lsi04g01952 Lsi-Chr4:26628252 Lsi06g01329 Lsi-Chr6:23873869 3.67E-09 dispersed
Lsi04g01952 Lsi-Chr4:26628252 Lsi04g02114 Lsi-Chr4:28272578 1.58E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g874 Blo03g00728 . . . . . . . . . . . . . . . . Bhi09g03594 . . . Hepe01g1487 . . . . . . . . . Cone6ag0227 Cone9ag0260 . . Lsi04g01952 . . . . Blo10g00713 . Bda12g00801 . . Bma07g01119 . . . Cmo09g00683 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004301 1 2 4 3 2 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01952 Lsi_Chr04 FPKM 7.267958 7.014259 1.015121 1.072275 14.842702 13.302608 14.092564 0.590303 0.210461 0.221414