Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01953 ATGCAAAGCTTTCGATTCTTACGAATTCCTTTGTTTCCTCCCAATGCTCTAATCTTCCTCTCTCAAACTCCTCATCTTCTTCCTGTGAAACCCATTTCCAGAATTCCCACCAAGATTTTCAGTTCCCAAATGGGGTCATCGCCATCATCTTCATCGTCTAAGCTCTTGTTCCGTCAATTGTTCGAGAAGGAATCTTCTACTTACACTTACCTTCTCGCTGATGTTTCCCACCCTGATAAACCAGCGCTTTTGATTGACCCGGTTGACAAGACTGTAGATAGGGACCTAAATCTTATAGGAGAATTGGGACTGAAGCTTGTATATGCTATGAATACTCATGTGCATGCTGATCATGTCACTGGGACTGGACTCATCAAGAGTAAATTTCCAGGAGCGAAATCTGTTATCTCGAGAGCAAGTGGTTCAAAAGCTGATGTGTTGATTGAACCTGGTGATAGAATTTCTTTTGGTGATCTATTCCTGGAGGTTCGTGCAACTCCAGGGCACACATCAGGATGTGTCACCTATGTAACAGGGGATGAACCTGATCAGCCTCATCCTAGGATGGCATTCACTGGCGATGCTCTGTTGATACGTGGATGTGGGAGGACAGATTTTCAGGGCGGAAGTTCAAAGCAGCTCTATGAATCTGTACACTCGCAGATTTTCACTCTGCCAAAGGACACATTGATCTATCCAGCTCATGATTACAAGGGATTTAGTGTTAGTACTGTAGGTGAAGAGATGGCATACAATCCCCGGCTTACCAAGGATCTGGAAGAATTCAAGAAAATTATGGAAAATTTGAACCTGCCTTATCCAAAGATGATCGACAGAGCAGTTCCAGCAAATTTGGTGTGTGGGTTGCAAGATCCAGCTTATTAA 885 43.62 MQSFRFLRIPLFPPNALIFLSQTPHLLPVKPISRIPTKIFSSQMGSSPSSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLNLIGELGLKLVYAMNTHVHADHVTGTGLIKSKFPGAKSVISRASGSKADVLIEPGDRISFGDLFLEVRATPGHTSGCVTYVTGDEPDQPHPRMAFTGDALLIRGCGRTDFQGGSSKQLYESVHSQIFTLPKDTLIYPAHDYKGFSVSTVGEEMAYNPRLTKDLEEFKKIMENLNLPYPKMIDRAVPANLVCGLQDPAY 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26645535 26649544 + Lsi04G019530.1 Lsi04g01953 662002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01953 294 PANTHER PERSULFIDE DIOXYGENASE ETHE1 29 291 - -
Lsi04g01953 294 SUPERFAMILY Metallo-hydrolase/oxidoreductase 66 275 IPR036866 -
Lsi04g01953 294 Gene3D - 56 284 IPR036866 -
Lsi04g01953 294 Pfam Metallo-beta-lactamase superfamily 66 235 IPR001279 -
Lsi04g01953 294 SMART Lactamase_B_5a 66 235 IPR001279 -
Lsi04g01953 294 PANTHER BNAC03G69760D PROTEIN 29 291 - -
Lsi04g01953 294 CDD POD-like_MBL-fold 56 237 IPR044528 GO:0006749|GO:0050313
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01953 K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18] - csv:101221943 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01006 Lsi-Chr4:11297067 Lsi04g01953 Lsi-Chr4:26645535 2.85E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g876 Blo03g00727 . . . . . . . . . . . . . Sed05g2484 . . Bhi09g03592 Tan01g4230 Cmetu07g1493 . Hepe01g1486 Mch11g0961 . . . . . . . . Cone6ag0228 Cone9ag0261 . . Lsi04g01953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008021 0 1 1 1 0 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01953 Lsi_Chr04 FPKM 1.448133 1.057148 0.084519 0.303063 1.863586 2.097772 1.609648 0.0 0.0 0.0