Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01957 ATGTCGTATGGAGCAGCTACGATTTCAATTTGGATAGTACTTGTGGTATTATTATTATTGGGATGGAAATTACTGAACTGGATTTGGTTTAAGCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGATTCGTCGGAAATTCTTACCGGATTCTCTACGGCGACTTGAAGGACAGAGCCGCCATGAGAGAGCAAGCAATCTCAAAACCCATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCTTCATACCATTCAGAATTATGGCAAGAATTCATTCATGTGGCTTGGGCCTATACCAAGAGTGAACATCATGGACCCTGAGCAACTTAAAATTGTGTTTTCATTGATCAATGATTTCCAAAAGCCAACTATAAATCCCTATGCCAGGTTGCTTGCACATGGACTTTTAAACTATGAAGGACCAAAATGGGTCAAACACAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAGCTTAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAGATGGTTAGCAAATGGGAAAGCATGGTCTCTATAGAAGGATTTTGTGAGTTAGATGTAATGCCTTATCTACAAAATATGACTGCTGATGTGATTTCTCGAACTGCATTTGGGAGTAGCTATGAGAAAGGAAAAAAGATATTCAAGCTTCAAACTGAACTAGCTGCTTTGGTGATTCAATCTACCTTAGGTATTTATATTCCAGGATGGAGATTTCTTCCCACAAAGTTAAACAATAAAATGAAAGAGATAAGTAAAGAGATAACAACTTTGATCTTGGGTATTATGAATGAAAGGGAAAAGTCTATGAAGGAAGGTGAAGCTATACAAACTGATCTACTAAGCATTCTCATGGAATCCAATTTTAATGAAATTAAACAACATGGAAATAATAAACACATTGGAATGAGCATAGAAGATGTTATTGCTGAATGCAAGCTTTTCTATATTGCTGGCCAAGAAACTACAGCAACATTACTAATTTGGACGATGATACTGTTGAGTTCATACTCAGAATGGCAAGAGCAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGACTATGATGGTTTAAGTCGACTAAAAGTTGTAACTATGATCTTGAATGAGGTTCTCAGGTTATACCCACCAGTGACTATGTTTAGTCGTTTTGTTAAAAAAGAAACAAGACTTGGAAAATTGACTTTACCAGCCGGAGTGATGTTGGGCTTACCAATTATTCTTATCCAACGTGATCCTGAGCTATGGGGAGAAGATGCAAATGAATTTAAACCAGAAAGATTTTCTGAGGGAGTTTCTAAAGCAACAAAAAATTCAAGTGCTTTTGTACCATTTGGTTGGGGTCCTCGAATATGCATAGGACTAAACTTTGCCATGATCGAAGCAAAATTGGCATTATCAATGATCCTACAACGCTTCTCATTTGAGCTTTCGTCGTCGTATACACACGCTCCCATCGTCACCTTAACAACGCAGCCTCAACATGGAGCTCATCTCATACTACACAAACTGTAG 1554 37.77 MSYGAATISIWIVLVVLLLLGWKLLNWIWFKPKKLEKLLRQQGFVGNSYRILYGDLKDRAAMREQAISKPMNFSNDIAPRVIPSVLHTIQNYGKNSFMWLGPIPRVNIMDPEQLKIVFSLINDFQKPTINPYARLLAHGLLNYEGPKWVKHRKIINPAFHLEKLKDMVPAFYHSCNEMVSKWESMVSIEGFCELDVMPYLQNMTADVISRTAFGSSYEKGKKIFKLQTELAALVIQSTLGIYIPGWRFLPTKLNNKMKEISKEITTLILGIMNEREKSMKEGEAIQTDLLSILMESNFNEIKQHGNNKHIGMSIEDVIAECKLFYIAGQETTATLLIWTMILLSSYSEWQEQARAEVFEIFGNKKPDYDGLSRLKVVTMILNEVLRLYPPVTMFSRFVKKETRLGKLTLPAGVMLGLPIILIQRDPELWGEDANEFKPERFSEGVSKATKNSSAFVPFGWGPRICIGLNFAMIEAKLALSMILQRFSFELSSSYTHAPIVTLTTQPQHGAHLILHKL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26673143 26678367 + Lsi04G019570.1 Lsi04g01957 662006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01957 517 Gene3D Cytochrome P450 78 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 12 513 - -
Lsi04g01957 517 PANTHER CYTOCHROME 12 513 - -
Lsi04g01957 517 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 Pfam Cytochrome P450 90 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01957 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Lsi04g01957 517 SUPERFAMILY Cytochrome P450 82 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01489 Lsi-Chr3:25926767 Lsi04g01957 Lsi-Chr4:26673143 5.07E-171 dispersed
Lsi03g01491 Lsi-Chr3:25937322 Lsi04g01957 Lsi-Chr4:26673143 3.91E-176 dispersed
Lsi04g00349 Lsi-Chr4:3469703 Lsi04g01957 Lsi-Chr4:26673143 9.37E-15 dispersed
Lsi04g01957 Lsi-Chr4:26673143 Lsi04g01961 Lsi-Chr4:26710691 0 dispersed
Lsi04g01959 Lsi-Chr4:26690444 Lsi04g01957 Lsi-Chr4:26673143 5.12E-44 dispersed
Lsi04g01963 Lsi-Chr4:26717081 Lsi04g01957 Lsi-Chr4:26673143 1.58E-29 dispersed
Lsi04g01957 Lsi-Chr4:26673143 Lsi04g01958 Lsi-Chr4:26681173 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01957 - - csv:101222418 899.427