Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01958 ATGTCGTCTGTAGTAGCTACGATTTCGATTTGGATAATACTTATAGTATTATTATTGGGATGGAAATTACTAAACTGGATTTGGTTAAAGCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGATTCGCCGGAAATTCTTACCAGATTCTCTACGGTGACTTGAAGGTCAGAGCCGCCATGAGAGAGCAAGCAATCTCAAAGCCCATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCTTCATACCATCCAGAATTATGGCAAGAATTCATTTATGTGGCTTGGGCCCACACCAAGAGTGCACATCATGGACCCTCAACAACTTAAAGCTGTGTTTTCATTGATCAATGATTTCCAAAAGCCAACTATGAATCCCTTTCTCAGGTTGCTTGCAAATGGACTTGTAACTCATGAAGGACGAAAATGGGCCAAACACAGAAAGATAATCAACCCTGCATTTCATTTACAAAAGCTTAAGGATATGGAACCAGCATTCTATCACAGTTGTAATGAAATGGTTAGCAAATGGGAAAGCATGATTTCAGTAGAAGAAGGATCTTGTGAGTTAGATGTAATGCCTTACCTACAAAATATGGCTGGTGATGTGATTTCACGAACTGCATTTGGGAGTAGTTATGAGAAAGGAAAAAAGATATTCAAGCTTCAAACTGAACTAGGTGCTTTGGTGATTCAATCTACCATGGGGATTTATATTCCAGGATGGAGGTTTCTACCCACAAAGTCAAACAATAGAATGAAAAAGATAAGTAAAGAGATAACAACTTTGGTCTTGGGTATTATGAATGAAAGAGAAAAGTCTATGAGGGCAGGTGAAGCTATACAAACTGATTTACTAAGCATTCTCATGGAATCCAATTTGAATGAAATTAAACAACATGGAAATAATAAACACATTGGAATGAGCATAGAAGATGTTATTGATGAATGCAAGCTTTTCTATATTGTTGGCCAAGAAACTACAGCTACATTACTAACTTGGACGATGGTATTATTGAGTTCATACTCAGAATGGCAAGAACAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGATTATGATGGTTTAAGTCGACTAAAAGTTGTAACTATGATCTTCAACGAGGTTCTTAGGTTATACCCACCAGTGAGTATGTTTGAGCGTATTGTTAAAAAAGAAACAAGACTTGAAAAATTGACTGTACCAGCAGGAGTGACCGTAGGCTTACCAATTGTTCTTATCCAACGTGATCCTGAGTTTTGGGGAGATGATGCAGATGAATTTAAACCAGAAAGATTTTCTGAGGGAGTTTCTAAAGCAACAAAAAATCCAAGTGCTTTTGTACCATTTGGTTATGGTCCTCGAATATGCATAGGACTAAACTTTGCCATGACTGAAGCAAAAATGGCATTATCAATGATCCTACAACGCTTCTCATTTGAGCTTTCCTCATCGTATACACACGCTCCCACCGCCTTCTTAACAATGCAGCCTCAACATGGAGCTCATCTCATACTACACAAACTATAG 1554 38.03 MSSVVATISIWIILIVLLLGWKLLNWIWLKPKKLEKLLRQQGFAGNSYQILYGDLKVRAAMREQAISKPMNFSNDIAPRVIPSVLHTIQNYGKNSFMWLGPTPRVHIMDPQQLKAVFSLINDFQKPTMNPFLRLLANGLVTHEGRKWAKHRKIINPAFHLQKLKDMEPAFYHSCNEMVSKWESMISVEEGSCELDVMPYLQNMAGDVISRTAFGSSYEKGKKIFKLQTELGALVIQSTMGIYIPGWRFLPTKSNNRMKKISKEITTLVLGIMNEREKSMRAGEAIQTDLLSILMESNLNEIKQHGNNKHIGMSIEDVIDECKLFYIVGQETTATLLTWTMVLLSSYSEWQEQARAEVFEIFGNKKPDYDGLSRLKVVTMIFNEVLRLYPPVSMFERIVKKETRLEKLTVPAGVTVGLPIVLIQRDPEFWGDDADEFKPERFSEGVSKATKNPSAFVPFGYGPRICIGLNFAMTEAKMALSMILQRFSFELSSSYTHAPTAFLTMQPQHGAHLILHKL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26681173 26685126 + Lsi04G019580.1 Lsi04g01958 662007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01958 517 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PANTHER CYTOCHROME P450-RELATED 3 514 - -
Lsi04g01958 517 Gene3D Cytochrome P450 77 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 SUPERFAMILY Cytochrome P450 81 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 Pfam Cytochrome P450 89 493 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 3 514 - -
Lsi04g01958 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Lsi04g01958 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01958 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01958 Lsi-Chr4:26681173 Lsi04g01961 Lsi-Chr4:26710691 0 dispersed
Lsi04g01957 Lsi-Chr4:26673143 Lsi04g01958 Lsi-Chr4:26681173 0 tandem
Lsi04g01958 Lsi-Chr4:26681173 Lsi04g01959 Lsi-Chr4:26690444 1.90E-37 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01958 - - csv:101222418 864.374