Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01958 | ATGTCGTCTGTAGTAGCTACGATTTCGATTTGGATAATACTTATAGTATTATTATTGGGATGGAAATTACTAAACTGGATTTGGTTAAAGCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGATTCGCCGGAAATTCTTACCAGATTCTCTACGGTGACTTGAAGGTCAGAGCCGCCATGAGAGAGCAAGCAATCTCAAAGCCCATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCTTCATACCATCCAGAATTATGGCAAGAATTCATTTATGTGGCTTGGGCCCACACCAAGAGTGCACATCATGGACCCTCAACAACTTAAAGCTGTGTTTTCATTGATCAATGATTTCCAAAAGCCAACTATGAATCCCTTTCTCAGGTTGCTTGCAAATGGACTTGTAACTCATGAAGGACGAAAATGGGCCAAACACAGAAAGATAATCAACCCTGCATTTCATTTACAAAAGCTTAAGGATATGGAACCAGCATTCTATCACAGTTGTAATGAAATGGTTAGCAAATGGGAAAGCATGATTTCAGTAGAAGAAGGATCTTGTGAGTTAGATGTAATGCCTTACCTACAAAATATGGCTGGTGATGTGATTTCACGAACTGCATTTGGGAGTAGTTATGAGAAAGGAAAAAAGATATTCAAGCTTCAAACTGAACTAGGTGCTTTGGTGATTCAATCTACCATGGGGATTTATATTCCAGGATGGAGGTTTCTACCCACAAAGTCAAACAATAGAATGAAAAAGATAAGTAAAGAGATAACAACTTTGGTCTTGGGTATTATGAATGAAAGAGAAAAGTCTATGAGGGCAGGTGAAGCTATACAAACTGATTTACTAAGCATTCTCATGGAATCCAATTTGAATGAAATTAAACAACATGGAAATAATAAACACATTGGAATGAGCATAGAAGATGTTATTGATGAATGCAAGCTTTTCTATATTGTTGGCCAAGAAACTACAGCTACATTACTAACTTGGACGATGGTATTATTGAGTTCATACTCAGAATGGCAAGAACAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGATTATGATGGTTTAAGTCGACTAAAAGTTGTAACTATGATCTTCAACGAGGTTCTTAGGTTATACCCACCAGTGAGTATGTTTGAGCGTATTGTTAAAAAAGAAACAAGACTTGAAAAATTGACTGTACCAGCAGGAGTGACCGTAGGCTTACCAATTGTTCTTATCCAACGTGATCCTGAGTTTTGGGGAGATGATGCAGATGAATTTAAACCAGAAAGATTTTCTGAGGGAGTTTCTAAAGCAACAAAAAATCCAAGTGCTTTTGTACCATTTGGTTATGGTCCTCGAATATGCATAGGACTAAACTTTGCCATGACTGAAGCAAAAATGGCATTATCAATGATCCTACAACGCTTCTCATTTGAGCTTTCCTCATCGTATACACACGCTCCCACCGCCTTCTTAACAATGCAGCCTCAACATGGAGCTCATCTCATACTACACAAACTATAG | 1554 | 38.03 | MSSVVATISIWIILIVLLLGWKLLNWIWLKPKKLEKLLRQQGFAGNSYQILYGDLKVRAAMREQAISKPMNFSNDIAPRVIPSVLHTIQNYGKNSFMWLGPTPRVHIMDPQQLKAVFSLINDFQKPTMNPFLRLLANGLVTHEGRKWAKHRKIINPAFHLQKLKDMEPAFYHSCNEMVSKWESMISVEEGSCELDVMPYLQNMAGDVISRTAFGSSYEKGKKIFKLQTELGALVIQSTMGIYIPGWRFLPTKSNNRMKKISKEITTLVLGIMNEREKSMRAGEAIQTDLLSILMESNLNEIKQHGNNKHIGMSIEDVIDECKLFYIVGQETTATLLTWTMVLLSSYSEWQEQARAEVFEIFGNKKPDYDGLSRLKVVTMIFNEVLRLYPPVSMFERIVKKETRLEKLTVPAGVTVGLPIVLIQRDPEFWGDDADEFKPERFSEGVSKATKNPSAFVPFGYGPRICIGLNFAMTEAKMALSMILQRFSFELSSSYTHAPTAFLTMQPQHGAHLILHKL | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26681173 | 26685126 | + | Lsi04G019580.1 | Lsi04g01958 | 662007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01958 | 517 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PANTHER | CYTOCHROME P450-RELATED | 3 | 514 | - | - | |
Lsi04g01958 | 517 | Gene3D | Cytochrome P450 | 77 | 516 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | SUPERFAMILY | Cytochrome P450 | 81 | 515 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | Pfam | Cytochrome P450 | 89 | 493 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 3 | 514 | - | - | |
Lsi04g01958 | 517 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi04g01958 | 517 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01958 | 517 | PRINTS | P450 superfamily signature | 379 | 390 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01958 | Lsi-Chr4:26681173 | Lsi04g01961 | Lsi-Chr4:26710691 | 0 | dispersed | |
Lsi04g01957 | Lsi-Chr4:26673143 | Lsi04g01958 | Lsi-Chr4:26681173 | 0 | tandem | |
Lsi04g01958 | Lsi-Chr4:26681173 | Lsi04g01959 | Lsi-Chr4:26690444 | 1.90E-37 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01958 | - | - | csv:101222418 | 864.374 |