Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01960 ATGGATAGCAAGTATTCATTCATGTGGCTTGGACCCATACCAAGAGTGCATATCATGGACCCTGAACAACTTAAAATTGTGTTTTCATTGATCAATGATTTCCAAAAGCCAACTATAAACCCCCTTGTCAGGTTGCTTGCAAATGGACTTGCAAATCATGAAGGACCAAAATGGGTCAAACACAGAAAGATAATCAACCATGCATTTCATTTACAAAAGCTTAAGGATATGGTACCAGCATTTTATCACAGCTGTAACGAGATGATTAGTAAATGGGAAAGCATGGTCTTTGTAGAAGGATCTTGTGAGTTAGATGTAATGCCTTATCTACAAAATATGGCTGCTGATGTGATTTCTCGAACTGCATTTGGGAGATGGAGATTTCTACCCACAAAGTCAAACAATAAAATGAAAGAGATAAGTAAAGAGATAACAACTTTGATCTTGGGTATTATGAATGAAAGGGAAAAGTCAATGAAGGCAGGTGAAGTTATACAAACTGATCTACTAAGCATTCTCATGGAATCCAATTTGAATGAAATTAAACAACATGGAAACAATAAAGACATTGGAATAAGCATAGAAGATGTTATTGCAGAGTGCAAGCTTTTCTATATTGCTGGCCAAGAAACTACAGCTACGTTACTAGTTTGGACGATGGTATTGTTGAGTTCATACTCAGAATGGCAAGAACAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGATTATGATGGTTTAAGTCGACTAAAAGTTTTTTATCTCATATATGAAATTAAATGCCCATCTTTCGATATAAAGCAATCATATGAGAAAGTTTTGGAGGAATCAATACTGAATAGTCTAGAAAGGTTATACCCACCATTGAGTATGTTTGGTCATATGGTTAAGAAAGAAACAAGACTTGGAAATTTGACTTTACCAGCAGGAGTGATGTTGGGCATACCAAGTGTTCTTATCCAACATGATCCTAAGTCATGGGGAGAAGATGCAGATGAATTTAAACCAGAAAGATTTTTTGAAGGAGTTTCTAAAGCAACAAAAAATCTAAGTGCTTTCGTACCATTTGGTTGGGGTCCTCGAATATGCATAGGACTAAACTTTGCTATGATTGAAGCAAAAATGGCATTATCAATCATCCTACAAGGCTTCTCATTTGAGCTTTCGTCATCATATGCACACGCTCCCACAGCCGCCTTAACAACGCAACCTCAACATGGAGCTCATCTCATACTACACAAACTGTAG 1260 36.9 MDSKYSFMWLGPIPRVHIMDPEQLKIVFSLINDFQKPTINPLVRLLANGLANHEGPKWVKHRKIINHAFHLQKLKDMVPAFYHSCNEMISKWESMVFVEGSCELDVMPYLQNMAADVISRTAFGRWRFLPTKSNNKMKEISKEITTLILGIMNEREKSMKAGEVIQTDLLSILMESNLNEIKQHGNNKDIGISIEDVIAECKLFYIAGQETTATLLVWTMVLLSSYSEWQEQARAEVFEIFGNKKPDYDGLSRLKVFYLIYEIKCPSFDIKQSYEKVLEESILNSLERLYPPLSMFGHMVKKETRLGNLTLPAGVMLGIPSVLIQHDPKSWGEDADEFKPERFFEGVSKATKNLSAFVPFGWGPRICIGLNFAMIEAKMALSIILQGFSFELSSSYAHAPTAALTTQPQHGAHLILHKL 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26698375 26704601 + Lsi04G019600.1 Lsi04g01960 662009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01960 419 Pfam Cytochrome P450 127 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 Pfam Cytochrome P450 8 125 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 Pfam Cytochrome P450 288 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS P450 superfamily signature 358 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS P450 superfamily signature 207 224 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS P450 superfamily signature 281 292 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 Gene3D Cytochrome P450 4 418 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PANTHER CYTOCHROME P450 72A11-RELATED 8 124 - -
Lsi04g01960 419 PANTHER CYTOCHROME P450 72A11-RELATED 126 410 - -
Lsi04g01960 419 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 360 369 IPR017972 GO:0005506|GO:0016705
Lsi04g01960 419 PRINTS E-class P450 group I signature 357 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS E-class P450 group I signature 321 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS E-class P450 group I signature 216 242 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS E-class P450 group I signature 196 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PRINTS E-class P450 group I signature 367 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 SUPERFAMILY Cytochrome P450 6 417 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01960 419 PANTHER CYTOCHROME P450 FAMILY MEMBER 8 124 - -
Lsi04g01960 419 PANTHER CYTOCHROME P450 FAMILY MEMBER 126 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01960 Lsi-Chr4:26698375 Lsi06g00316 Lsi-Chr6:3599628 2.16E-123 dispersed
Lsi04g01960 Lsi-Chr4:26698375 Lsi04g01961 Lsi-Chr4:26710691 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01960 - - csv:101222418 649.047