Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01961 | ATGTCGTATGGAGCAGCTACGATTTCAATTTGGATAATACTTGTGGTATTATTATTATTGGGATGGAAATTACTGAACTGGATTTGGTTTAAGCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGATTCGACGGAAATTCTTACCGGTTTCTCTACGGCGACTTGAAGGACAGAGCCGCCATGAGAGAGCAAGCAATCTCCAAGCCCATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCACCATACCATTCAGAATTATGGCAAGAATTCATTTATGTGGCTTGGGCCCATACCAAGAGTGCACATCATGGACCCTGAACAACTTAAAATTGTGTTTTCATTAATCAATGATTTCCAAAAGCCAACTATGAATCCCCTTGTCAAGTTGCTTGCAGATGGGCTTGTAAATTATGAAGGACCAAAATGGGTCAAACACAGAAAGATAATCAACCCTGCATTTCATTTAGAAAAGCTTAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAGATGGTTAGCAAATGGGAAAGCATGGTCTCTGTAGAAGGTTCTTGTGAGTTAGATGTAATGCCTTACCTACAAAATATGGCTGCTGATGTGATTTCTCGAACTGCATTTGGGAGTAGCTATGAGAAAGGAAAATTGATCTTCAAGCTTCAAACTGAATTAGCTAATTTGGTGATTCAATCAACCTTAGGGATTTATATTCCAGGATGGAGATTTCTACCCACAAAGTCAAACAATAAAATGAAAGAGATAAGTAAAGAGATAACAACTTTGATCTTGGGTATTATGAATGAAAGGGAAAAGTCAATGAAGGCAGGTGAAGTTATACAAACTGATCTACTAAGCATTCTCATGGAATCCAATTTGAATGAAATTAAACAACATGGAAACAATAAAGACATTGGAATGAGCATAGAAGATGTTATTGCTGAGTGCAAACTTTTCTATATTGCTGGCCAAGAAACTACAGCTACGTTACTAGTTTGGACGATGGTATTGTTGAGTTCATACTCAGAATGGCAAGAACAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGATTATGATGGTTTAAGTCGACTAAAAGTTGTAACTATGATCTTGAACGAGGTTCTCAGGTTATACCCACCAGTGAGTATGTTTGGCCGTCTTGTTAAGAAAGAAACAAGACTTGGAAATTTGACTTTACCAGTAGGAGTGATGTTGAGCTTACCAAGTGTTCTTATCCAACGTGATCCTGAGTCATGGGGAGAAGATGCAGATGAATTTAAACCAGAAAGATTTTCTAAGGGAGTTTCTAAAGCAACAAAAAATCCAAGCGCTTTCATACCATTTGGTTGGGGTCCTCGAATATGCATAGGACTAAACTTTGCTATGATTGAAGCAAAAATGGCATTATCAATGATCCTACAACACTTCTCATTTGAGCTTTCGTCATCATATACACATGCTCCCACAGCCGCCTTAACAACACAGCCTCAACATGGAGCTCATCTCATACTACACAAACTGTAG | 1554 | 38.42 | MSYGAATISIWIILVVLLLLGWKLLNWIWFKPKKLEKLLRQQGFDGNSYRFLYGDLKDRAAMREQAISKPMNFSNDIAPRVIPSVHHTIQNYGKNSFMWLGPIPRVHIMDPEQLKIVFSLINDFQKPTMNPLVKLLADGLVNYEGPKWVKHRKIINPAFHLEKLKDMVPAFYHSCNEMVSKWESMVSVEGSCELDVMPYLQNMAADVISRTAFGSSYEKGKLIFKLQTELANLVIQSTLGIYIPGWRFLPTKSNNKMKEISKEITTLILGIMNEREKSMKAGEVIQTDLLSILMESNLNEIKQHGNNKDIGMSIEDVIAECKLFYIAGQETTATLLVWTMVLLSSYSEWQEQARAEVFEIFGNKKPDYDGLSRLKVVTMILNEVLRLYPPVSMFGRLVKKETRLGNLTLPVGVMLSLPSVLIQRDPESWGEDADEFKPERFSKGVSKATKNPSAFIPFGWGPRICIGLNFAMIEAKMALSMILQHFSFELSSSYTHAPTAALTTQPQHGAHLILHKL | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26710691 | 26715185 | + | Lsi04G019610.1 | Lsi04g01961 | 662010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01961 | 517 | SUPERFAMILY | Cytochrome P450 | 80 | 515 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | Pfam | Cytochrome P450 | 89 | 492 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 11 | 514 | - | - | |
Lsi04g01961 | 517 | Gene3D | Cytochrome P450 | 74 | 516 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 458 | 467 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 455 | 465 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 465 | 488 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 89 | 108 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | E-class P450 group I signature | 419 | 443 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PANTHER | CYTOCHROME P450-RELATED | 11 | 514 | - | - | |
Lsi04g01961 | 517 | PRINTS | P450 superfamily signature | 465 | 476 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | P450 superfamily signature | 456 | 465 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi04g01961 | 517 | PRINTS | P450 superfamily signature | 379 | 390 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00350 | Lsi-Chr4:3481672 | Lsi04g01961 | Lsi-Chr4:26710691 | 1.83E-132 | dispersed | |
Lsi04g01957 | Lsi-Chr4:26673143 | Lsi04g01961 | Lsi-Chr4:26710691 | 0 | dispersed | |
Lsi04g01958 | Lsi-Chr4:26681173 | Lsi04g01961 | Lsi-Chr4:26710691 | 0 | dispersed | |
Lsi04g01961 | Lsi-Chr4:26710691 | Lsi06g00316 | Lsi-Chr6:3599628 | 3.83E-153 | dispersed | |
Lsi04g01961 | Lsi-Chr4:26710691 | Lsi04g01963 | Lsi-Chr4:26717081 | 2.54E-42 | proximal | |
Lsi04g01960 | Lsi-Chr4:26698375 | Lsi04g01961 | Lsi-Chr4:26710691 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01961 | - | - | csv:101222418 | 901.738 |