Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01961 ATGTCGTATGGAGCAGCTACGATTTCAATTTGGATAATACTTGTGGTATTATTATTATTGGGATGGAAATTACTGAACTGGATTTGGTTTAAGCCCAAGAAATTAGAGAAGCTTTTAAGACAGCAAGGATTCGACGGAAATTCTTACCGGTTTCTCTACGGCGACTTGAAGGACAGAGCCGCCATGAGAGAGCAAGCAATCTCCAAGCCCATGAACTTCTCCAATGATATTGCTCCACGTGTTATTCCTTCTGTTCACCATACCATTCAGAATTATGGCAAGAATTCATTTATGTGGCTTGGGCCCATACCAAGAGTGCACATCATGGACCCTGAACAACTTAAAATTGTGTTTTCATTAATCAATGATTTCCAAAAGCCAACTATGAATCCCCTTGTCAAGTTGCTTGCAGATGGGCTTGTAAATTATGAAGGACCAAAATGGGTCAAACACAGAAAGATAATCAACCCTGCATTTCATTTAGAAAAGCTTAAGGATATGGTACCAGCATTCTATCACAGTTGTAACGAGATGGTTAGCAAATGGGAAAGCATGGTCTCTGTAGAAGGTTCTTGTGAGTTAGATGTAATGCCTTACCTACAAAATATGGCTGCTGATGTGATTTCTCGAACTGCATTTGGGAGTAGCTATGAGAAAGGAAAATTGATCTTCAAGCTTCAAACTGAATTAGCTAATTTGGTGATTCAATCAACCTTAGGGATTTATATTCCAGGATGGAGATTTCTACCCACAAAGTCAAACAATAAAATGAAAGAGATAAGTAAAGAGATAACAACTTTGATCTTGGGTATTATGAATGAAAGGGAAAAGTCAATGAAGGCAGGTGAAGTTATACAAACTGATCTACTAAGCATTCTCATGGAATCCAATTTGAATGAAATTAAACAACATGGAAACAATAAAGACATTGGAATGAGCATAGAAGATGTTATTGCTGAGTGCAAACTTTTCTATATTGCTGGCCAAGAAACTACAGCTACGTTACTAGTTTGGACGATGGTATTGTTGAGTTCATACTCAGAATGGCAAGAACAAGCAAGAGCAGAGGTCTTTGAGATCTTTGGTAACAAGAAACCAGATTATGATGGTTTAAGTCGACTAAAAGTTGTAACTATGATCTTGAACGAGGTTCTCAGGTTATACCCACCAGTGAGTATGTTTGGCCGTCTTGTTAAGAAAGAAACAAGACTTGGAAATTTGACTTTACCAGTAGGAGTGATGTTGAGCTTACCAAGTGTTCTTATCCAACGTGATCCTGAGTCATGGGGAGAAGATGCAGATGAATTTAAACCAGAAAGATTTTCTAAGGGAGTTTCTAAAGCAACAAAAAATCCAAGCGCTTTCATACCATTTGGTTGGGGTCCTCGAATATGCATAGGACTAAACTTTGCTATGATTGAAGCAAAAATGGCATTATCAATGATCCTACAACACTTCTCATTTGAGCTTTCGTCATCATATACACATGCTCCCACAGCCGCCTTAACAACACAGCCTCAACATGGAGCTCATCTCATACTACACAAACTGTAG 1554 38.42 MSYGAATISIWIILVVLLLLGWKLLNWIWFKPKKLEKLLRQQGFDGNSYRFLYGDLKDRAAMREQAISKPMNFSNDIAPRVIPSVHHTIQNYGKNSFMWLGPIPRVHIMDPEQLKIVFSLINDFQKPTMNPLVKLLADGLVNYEGPKWVKHRKIINPAFHLEKLKDMVPAFYHSCNEMVSKWESMVSVEGSCELDVMPYLQNMAADVISRTAFGSSYEKGKLIFKLQTELANLVIQSTLGIYIPGWRFLPTKSNNKMKEISKEITTLILGIMNEREKSMKAGEVIQTDLLSILMESNLNEIKQHGNNKDIGMSIEDVIAECKLFYIAGQETTATLLVWTMVLLSSYSEWQEQARAEVFEIFGNKKPDYDGLSRLKVVTMILNEVLRLYPPVSMFGRLVKKETRLGNLTLPVGVMLSLPSVLIQRDPESWGEDADEFKPERFSKGVSKATKNPSAFIPFGWGPRICIGLNFAMIEAKMALSMILQHFSFELSSSYTHAPTAALTTQPQHGAHLILHKL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26710691 26715185 + Lsi04G019610.1 Lsi04g01961 662010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01961 517 SUPERFAMILY Cytochrome P450 80 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 Pfam Cytochrome P450 89 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 514 - -
Lsi04g01961 517 Gene3D Cytochrome P450 74 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Lsi04g01961 517 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PANTHER CYTOCHROME P450-RELATED 11 514 - -
Lsi04g01961 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01961 517 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00350 Lsi-Chr4:3481672 Lsi04g01961 Lsi-Chr4:26710691 1.83E-132 dispersed
Lsi04g01957 Lsi-Chr4:26673143 Lsi04g01961 Lsi-Chr4:26710691 0 dispersed
Lsi04g01958 Lsi-Chr4:26681173 Lsi04g01961 Lsi-Chr4:26710691 0 dispersed
Lsi04g01961 Lsi-Chr4:26710691 Lsi06g00316 Lsi-Chr6:3599628 3.83E-153 dispersed
Lsi04g01961 Lsi-Chr4:26710691 Lsi04g01963 Lsi-Chr4:26717081 2.54E-42 proximal
Lsi04g01960 Lsi-Chr4:26698375 Lsi04g01961 Lsi-Chr4:26710691 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01961 - - csv:101222418 901.738