Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01965 ATGGCAAAAGCGGCCACTCTCTCCTTTTTGCTTCTATTCCTTTCGTTCCTTTCAGGACGAGATTTGCTGGCAGTAAATGCACAGAAAACGTGGTGCATTCCGAAGCCTTCGTCGGATCAAGCGACGTTGTTGGCGAATACCAATTACGCTTGTGCTCAGGTAGATTGCAAAATAATGCAACAAGGAAACCCCTGCTTTTATCCTGATAATTTGTTCAACCATGCTGCCATAGCTATGAGTTTGTATTACAATTCCAAAGGGAAGAATCAATGGAACTGTGACTTTAGAGGCTCTGGTCTCGTAGTCACCACTGATCCAAGTTAG 324 44.14 MAKAATLSFLLLFLSFLSGRDLLAVNAQKTWCIPKPSSDQATLLANTNYACAQVDCKIMQQGNPCFYPDNLFNHAAIAMSLYYNSKGKNQWNCDFRGSGLVVTTDPS 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26722912 26723545 - Lsi04G019650.1 Lsi04g01965 662014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01965 107 PANTHER MAJOR POLLEN ALLERGEN OLE E 10-LIKE 6 107 - -
Lsi04g01965 107 Gene3D - 24 107 - -
Lsi04g01965 107 PANTHER BETA-1,3 GLUCANASE 6 107 IPR044788 -
Lsi04g01965 107 SMART X8_cls 30 107 IPR012946 -
Lsi04g01965 107 Pfam X8 domain 30 99 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01965 - - - csv:101223052 179.104
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01965 Lsi-Chr4:26722912 Lsi04g00877 Lsi-Chr4:8623955 2.25E-17 dispersed
Lsi04g01965 Lsi-Chr4:26722912 Lsi10g00360 Lsi-Chr10:5600839 1.20E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g8 . . . . . . . . . . Cma01g01278 . Car01g01093 . Sed04g2513 . Cpe02g00647 Bhi09g03588 Tan01g4237 Cmetu07g0669 . Hepe01g1479 Mch11g0969 . Cla11g01671 Cam11g1737 Cec11g1763 Cco11g1764 Clacu11g1896 Cmu11g1707 Cre11g2121 . . Cone14ag1013 . Lsi04g01965 Csa04g02244 . . . . . . Bpe11g00430 . . . . Cmo01g01331 Cmo09g00669 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007416 1 1 0 1 2 0 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 2 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01965 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g01965 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.024607 0.0 0.0
Lsi04g01965 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0