Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01967 ATGGATAGAGGCCAGGCTATAGCATTCTACATCACAATCAGTTGTGTTGCTTTCGTCGTATCGAAGATATTCATAACATTGCTTCTTTACAAGCGCTGGAAAAGAAGACACATGATTTATGAAGATGGGATATCAGGTGGGAAGATGGTAATGTTCAAGTCTCCAGCAACAAAGTCCTTAAAATCAGATGCATTCCTGAAGAAAACATTAAAACTTAACAATAAGGACATCATTGGCTCTGGAGGCCATGGGATTGTTTACAAACTTGCACTAAGTGATTCCATGACATTTGCTGTGAAAAGACTGAACAGAGGAAGTGCGGAAAGAGATCAAGGATTCGAGAGAGAGTTGGAAGCGATGGGAGATATAAAGCATCGGAATATCGTGACGCTTCACGGATACTACACAGCTCCTCACTATAATCTCCTTATATATGAGCTGATGCCTAATGGAAGTTTGTATGCATATCTACATGGAAGATCAAATGAAAAGGTTTTGGATTGGCCATCACGGTATAAAATAGCAGTAGGTGCAGCGAGAGGCATATCGTACCTTCATCACGACTGCATCCCACACATCATACATAGAGATATCAAGTCGAGCAACATATTGTTGGATCAAAACATGGACGCCCAAGTGTCCGACTTTGGATTGGCGACACTGATGGAACCTGACAAGACTCATGTATCAACAATTGTGGCAGGCACATTTGGGTACTTGGCTCCAGAATACTTCGATACCGGACGAGCAACGGTGAAAGGAGATGTCTACAGCTTTGGTGTAGTTCTTCTCGAGCTCTTAACAGGGAAAAAACCGACTGATGAGGCATTTATGGAAGAGGGAACTAAACTTGTGACATGGGTGAAAACAGTTGTTGAGGAGAAAAGGGAAGAATATGTACTTGACAGTAGTTTGGGCTGTTGTCCGGTTGACGAGGTTAATGGCGTATTTAGCATTGCATTGAAGTGTCTTGAACCGGAACCAGCTCAGCGACCGACAATGGTAGAGGTTGTCAAAGTTCTTGAGCAGATAAGGTCAAATAGCATTGTAACAGATTCTTGA 1062 42.47 MDRGQAIAFYITISCVAFVVSKIFITLLLYKRWKRRHMIYEDGISGGKMVMFKSPATKSLKSDAFLKKTLKLNNKDIIGSGGHGIVYKLALSDSMTFAVKRLNRGSAERDQGFERELEAMGDIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLYAYLHGRSNEKVLDWPSRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMDAQVSDFGLATLMEPDKTHVSTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPTDEAFMEEGTKLVTWVKTVVEEKREEYVLDSSLGCCPVDEVNGVFSIALKCLEPEPAQRPTMVEVVKVLEQIRSNSIVTDS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26728233 26730956 - Lsi04G019670.1 Lsi04g01967 662016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01967 353 Pfam Protein kinase domain 74 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01967 353 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Lsi04g01967 353 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Lsi04g01967 353 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 346 - -
Lsi04g01967 353 SMART serkin_6 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01967 353 ProSiteProfiles Protein kinase domain profile. 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01967 353 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Lsi04g01967 353 Gene3D Phosphorylase Kinase; domain 1 53 147 - -
Lsi04g01967 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lsi04g01967 353 PANTHER BNAA07G39120D PROTEIN 1 346 - -
Lsi04g01967 353 SUPERFAMILY Protein kinase-like (PK-like) 67 343 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01967 - - - csv:101202781 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01967 Lsi-Chr4:26728233 Lsi06g01488 Lsi-Chr6:25343556 2.08E-92 dispersed
Lsi04g01967 Lsi-Chr4:26728233 Lsi02g00318 Lsi-Chr2:2728480 2.85E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g10 . . . . . . . . . . . . . Car09g00604 . . . Bhi09g03584 . . . . Mch11g0971 . Cla11g01673 . . . . . . . . . . Lsi04g01967 Csa04g02246 . . . . . . . . . . . . Cmo09g00666 . . . . Cpe14g00338 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83598 PF00069 Pkinase 3.30E-47 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01967 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0