Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01968 ATGGGTTGCGAAGTGAATGAAAGCGACGAATACTCGCTGCTCCAGAATCTGAGGCTGGAAATTGATGGAGATGATGAGCGCTTTACTGTTTGCTTTTGGGTTTATCTCATGAATTCTACCACATTCCCTGTTTCAATCCTTCAGCAGGTTCAATTAGATTCCTCAGGCATGACTCCTTTTCTCATTCTAAGTGAAAGGAATAGACTGAAGATTATGCCTTTGACCTCCTTACACAAAGCTGATGAAAGTTCCAGCCCTGGTAGTTCTTCTTCCGGGAATGTAGTTCCACATGAATATCTAGACATTGATTTTCCAATGGAAAAATGGGTTCACATTGGATGCGAGATCTCCACCGATTTTGTCAGGCTACATATTGATGGGAAAATGGTTGGAGAAAAGCCTATATCATCTTCACTCAGTGAAGACACCTTTCCAAGGGGTCTGGGGAGGATTGTTTTAGGCAATAATGGCGAAGACAACAGCATGCAGGGCTATGTTCATAATGCAAAAGTTGTGCCTTCAGTTTCGTCGATCAGGGATCATTATGCTGAGGACCTACCTGTTAAATTATTTATTGACAACTCTTCCACCATGGAGATTGAAGAGGGCAGTGATGGCATCTGGAATATAGTTGGTGGCAAGCCATCTTGTCGTAGAAATTTTTCATTGGATGTTATGCTGTTAGATTCCTCTGGCCAGCCTGTTCTGAAGGAACTCGAGGTTGTTGCCTCCCTCATCTATGCTGAAAGTGGGGAAGCTGTGGAGAAGTCAGGTGATGAAGAAGCTCCCCTTTTGGCAAGCTATGATGGTGTTGAATTTGCTTCCAGTGATAGACCAAGTAAACTGTTGCATGGGCGTGCCTCCTTTAAGCTAAAAATATCTCAGCTATCTTCTAAATGTGATAACAAGCTCTTCCGCATTAGATTTTGTATACCTAGAGTTGAGGGGTATCCCTTCTTCGAGGCTCTCTCTTCTCCAATTCGTTGTATCTCAAGGAGTCGAAATACTCGTATGTCTACTTTGATGTTGAAAAGATCTACCTTCCATTCACTCGATGGATCTCGGTCATCTGGTTTGGACAATGGAACCTCAGAACATGAGCATGTTTCACTAGATGAAGAAAAACCAAGTCCGCTATTGAAGAGGATTAAGTTGGGACAAGATAGACCAACCCCTAATGATGATCCTTCATCAGGGCAACCAGATGAGGAATGCAATTCTCATTCTTTTACTGCTAATGGGGCCGAAAATGGATTTGGCACGAGTTTAACAGAAAGACCAAAAAGTAATGGATCAACAGGAGCCTCCCCATCAGACTCCGGGAGCACTGAAGCCAGGCATTCGGCTCTAAATAGAACTACACCCAATGACAATCCAATATCAGATGTGAACATTTTCAAATATTGTCTAGCAGGTTTATCTGAGAGGTCACTTCTGCTTAAGGAGATTGCAACCTCTGTGTCACAGGAAGAAATCCTGGAATTTGCCGAGCATGTTTCCCTGTATTCTGGATGCCTGCACCACAGGCATCAAATATTAATGTCAAGAAAATTAATAGAGGAGGGAACACAAGTTTGGAACTCAATCTCACATGATAAGCATCATGTTCACTGGGAGAATGTTGTTTTCGAGATTGAAGAGCATTTCATGAGAATTTCTGGCTGCAGCTCTAGATCTCTCACTCAGCAGGACTTTGAGTTGCTGAGGAGAATTTCTGGTTGTCAAGAGTATCTGGCCCAAGAGAACTTCGAAAGAATGTGGTGTTGGTTATATCCTGTAGCTTTTACTCTATCCAGACAATGGATAAATGCAATGTGGAGTTCTTTATCGCCTAAGTGGATTGAAGGATTCATTACCAAGGAAGAAGCCGAATTATCACTTCAAAGTCCGACAGGTCTTCAAGATCCTGGAACGTTTATTCTTCGATTTCCCACCTCAAGAAGCTGGCCTCATCCTGATGCTGGTAGCTTGGTAGTTACCTATGTCGGCAATGATTATGCTCTTCATCACAGACTTCTTACACTTGATCGCATTTTCAGTTCTGCTGAAGGAGATAAGAATATGAGAAGTCTTCAGGACATGCTTCTAGCAGAACCCGAGCTCTCTCGTTTGGGAAGAGTTCATGTCACAACTGATGAAAATCAGTTGTACCAGAGAATAGCCTTCAGCTACTTCAGCTCACTGAAACTCAAGAAACATGTCGAAAGACCGTCAACTTGCTGCCTTCATGGAGAGTTAAATGGAGGAAATGTCACAAGTTTGAGGCTGTCTTCCATTTAA 2280 42.72 MGCEVNESDEYSLLQNLRLEIDGDDERFTVCFWVYLMNSTTFPVSILQQVQLDSSGMTPFLILSERNRLKIMPLTSLHKADESSSPGSSSSGNVVPHEYLDIDFPMEKWVHIGCEISTDFVRLHIDGKMVGEKPISSSLSEDTFPRGLGRIVLGNNGEDNSMQGYVHNAKVVPSVSSIRDHYAEDLPVKLFIDNSSTMEIEEGSDGIWNIVGGKPSCRRNFSLDVMLLDSSGQPVLKELEVVASLIYAESGEAVEKSGDEEAPLLASYDGVEFASSDRPSKLLHGRASFKLKISQLSSKCDNKLFRIRFCIPRVEGYPFFEALSSPIRCISRSRNTRMSTLMLKRSTFHSLDGSRSSGLDNGTSEHEHVSLDEEKPSPLLKRIKLGQDRPTPNDDPSSGQPDEECNSHSFTANGAENGFGTSLTERPKSNGSTGASPSDSGSTEARHSALNRTTPNDNPISDVNIFKYCLAGLSERSLLLKEIATSVSQEEILEFAEHVSLYSGCLHHRHQILMSRKLIEEGTQVWNSISHDKHHVHWENVVFEIEEHFMRISGCSSRSLTQQDFELLRRISGCQEYLAQENFERMWCWLYPVAFTLSRQWINAMWSSLSPKWIEGFITKEEAELSLQSPTGLQDPGTFILRFPTSRSWPHPDAGSLVVTYVGNDYALHHRLLTLDRIFSSAEGDKNMRSLQDMLLAEPELSRLGRVHVTTDENQLYQRIAFSYFSSLKLKKHVERPSTCCLHGELNGGNVTSLRLSSI 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26730993 26740834 - Lsi04G019680.1 Lsi04g01968 662017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01968 759 MobiDBLite consensus disorder prediction 391 457 - -
Lsi04g01968 759 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 708 IPR001217 GO:0003700|GO:0006355|GO:0007165
Lsi04g01968 759 CDD SH2_SHA 602 710 - -
Lsi04g01968 759 MobiDBLite consensus disorder prediction 361 382 - -
Lsi04g01968 759 ProSiteProfiles Src homology 2 (SH2) domain profile. 613 695 IPR000980 -
Lsi04g01968 759 Gene3D SH2 domain 599 736 IPR036860 -
Lsi04g01968 759 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 174 IPR013320 -
Lsi04g01968 759 SUPERFAMILY SH2 domain 610 675 IPR036860 -
Lsi04g01968 759 MobiDBLite consensus disorder prediction 350 457 - -
Lsi04g01968 759 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 708 - -
Lsi04g01968 759 Gene3D - 45 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01968 - - - bhj:120086005 1343.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25238 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01968 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0