Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01972 ATGGATTCCTTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCAACAAAAGGAGGATCAATCGCTTGATTCATGTTCCCTCCCAGCCAAGAAGCGAAAGGAGTCTCGTGGTTCATCGTTACTCCTCGTTCCTGACGCTACTTTGCGTCAAGAAACCGCCATTTCCGCTTCTCCTTACTGCTTGCCCACCAAGAAAAGAGTGTGGGCGCTTCACCCTGATTTTGCCCCTGAATCATTGGATCTCAATGTTGAATACAAGCCTCCTCTGGAAGAAGAATCAATATCGAAAACAGAACTAGAGAGAGAGATAAAGGAGAAGGAAGAGGATAAGGAAAAGGAGCTTTCTGATGCTGAGATGAAGATTCAAGACGAAGATGAAGAGGAAGATGATGGGATTCTCTGTGCGATTTGTCAAAGCACGGATGGGGATCCTTCAGATCCAATCGTGTTCTGCGATGGATGTGATTTGATGGTACACGCTTCGTGTTATGGTAATCCTCTGGTGAAGAGTGTACCAGAAGGAGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGCTTCAGAAACTCCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCCATGAAACCGACGAACGACAGCCGATGGGCTCATATTGTTTGTGGCCTCTATGTTCCTGAAGTATTCTTCGAGGACCCAGATGGGAGAGAAGGGATTGATTGCTCGAAGATTCTGAAGAGGAGATGGAAATCCAAGTGTTATATCTGCAAAACTTCTAGAGGCTGTGCTATTGACTGCTCAGAGCCTAAATGCAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTCTGTATTGAGTACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGAAACCACACTGACTTGTGGAAGAAGCAACAACTGACAGGGAAGTTCAAAATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1020 45.49 MDSFHGLPPLKRLRILQEQEQNQQKEDQSLDSCSLPAKKRKESRGSSLLLVPDATLRQETAISASPYCLPTKKRVWALHPDFAPESLDLNVEYKPPLEEESISKTELEREIKEKEEDKEKELSDAEMKIQDEDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSVPEGDWFCIQCLASSSSKTEKKASETPFSCCLCPLKGGAMKPTNDSRWAHIVCGLYVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSRGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26757191 26759490 - Lsi04G019720.1 Lsi04g01972 662021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01972 339 MobiDBLite consensus disorder prediction 98 125 - -
Lsi04g01972 339 Pfam PHD-zinc-finger like domain 207 304 - -
Lsi04g01972 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 203 IPR013083 -
Lsi04g01972 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 105 - -
Lsi04g01972 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 205 317 IPR034732 -
Lsi04g01972 339 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
Lsi04g01972 339 PANTHER PHD FINGER PROTEINS 3 105 - -
Lsi04g01972 339 MobiDBLite consensus disorder prediction 32 46 - -
Lsi04g01972 339 CDD PHD_BRPF_JADE_like 141 189 - -
Lsi04g01972 339 MobiDBLite consensus disorder prediction 19 47 - -
Lsi04g01972 339 PANTHER PHD FINGER PROTEINS 120 335 - -
Lsi04g01972 339 Coils Coil 97 135 - -
Lsi04g01972 339 SMART PHD_3 262 317 IPR001965 -
Lsi04g01972 339 SMART PHD_3 141 190 IPR001965 -
Lsi04g01972 339 Pfam PHD-finger 142 190 IPR019787 -
Lsi04g01972 339 SUPERFAMILY FYVE/PHD zinc finger 129 196 IPR011011 -
Lsi04g01972 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 319 IPR013083 -
Lsi04g01972 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 120 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01972 Lsi-Chr4:26757191 Lsi08g00321 Lsi-Chr8:8433484 2.49E-19 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25239 PF13832 zf-HC5HC2H_2 3.50E-29 CL0390 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01972 K11380 - csv:101203744 575.859