Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01975 ATGTCTGGAAGAAATCGAGGACCGCCCATCCCACTAAATGGTGTTCCTCACGGTGGACTACCACCAGTTCGTGAACCTCCTTTTGCCAGAGGTCTTGGGCCATTGCCACATCCAGTGCTTCTTGAGGAAATCAGGGAATCACAGTACGGGATGCATCCAGGGTCGCTTCCTCCACACCCTGTAATAATCGAGGAGCGTCTTGCTGCCCAACATCAAGATATTCAAGGTCTTCTTCTTGACAACCAGAGGCTAGCTGCGACCCATGTTGCGCTTAAACAGGAACTAGAAGCAGCCCAGCATGAGTTGCAACGCATGGCTCATGTTGCTGATTCCTTACATGCAGAAAGGGACATTCAGATGAGAGAATTATATGAAAAATCGGTAAGACTAGAGGTTGATCTGCGAGGAGTTGAGACTATGCGAGCAGAGCTTCTTCAAGTTCATTCTGACGTCAAGGAATTAACTGCTGCAAGGCAGGAACTCACTGGGCAAGTACAAGCAATGACACAAGATCTAACTAGAATTACTGCAGATTTGCAGCAGGTCCCTGCTTTGAGGACAGAAATTGAAACTGTGAAGCAGGAATTACATCGTGCTAGAGTTGCAATTGAGTATGAAAAGAAGGGATACGCGGAGAATTATGAACACGGTCAGGTTATGGAGAAGAAACTGGTTTCAATGGCCAGGGAATTGGAGAAACTTAGAGCTGAGGTTGCTAATGCAGAGAAGAGAGCTCATGCTTCTGCTGCTGTTGGTGGAAATGCTGCTGCTGGGTATGGTGCAACTTATGGCAATGCTGATGCTGGATACACGGGAAATCCATATTCTACCAATTATGGCTTGAACTCCGTGCAGTCTGGTACTGATGGTTATCCTCCGTATGGACCTGGATCTGTTCCCTGGGGTGCATATGACATGCAACGGGCTCAAGGACATAGATAG 942 47.45 MSGRNRGPPIPLNGVPHGGLPPVREPPFARGLGPLPHPVLLEEIRESQYGMHPGSLPPHPVIIEERLAAQHQDIQGLLLDNQRLAATHVALKQELEAAQHELQRMAHVADSLHAERDIQMRELYEKSVRLEVDLRGVETMRAELLQVHSDVKELTAARQELTGQVQAMTQDLTRITADLQQVPALRTEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLVSMARELEKLRAEVANAEKRAHASAAVGGNAAAGYGATYGNADAGYTGNPYSTNYGLNSVQSGTDGYPPYGPGSVPWGAYDMQRAQGHR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26779296 26785366 - Lsi04G019750.1 Lsi04g01975 662024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01975 313 MobiDBLite consensus disorder prediction 1 22 - -
Lsi04g01975 313 Coils Coil 151 171 - -
Lsi04g01975 313 PANTHER PROTEIN FLX-LIKE 2 1 313 IPR040353 -
Lsi04g01975 313 PANTHER PROTEIN FLX-LIKE 1 1 313 - -
Lsi04g01975 313 Coils Coil 217 251 - -
Lsi04g01975 313 Coils Coil 81 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01975 - - - csv:101204235 575.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01231 Lsi-Chr2:16161429 Lsi04g01975 Lsi-Chr4:26779296 1.54E-68 dispersed
Lsi03g00215 Lsi-Chr3:2749146 Lsi04g01975 Lsi-Chr4:26779296 4.31E-51 dispersed
Lsi04g01975 Lsi-Chr4:26779296 Lsi08g00407 Lsi-Chr8:11366298 1.96E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g23 Blo03g00711 . . . . . . . . . Cma01g01272 . Car01g01088 Car09g00600 Sed11g1611 Cpe06g00530 Cpe02g00651 Bhi09g03572 Tan01g4248 Cmetu07g1260 . Hepe01g1470 . . . . . . . . . . . Cone14ag1015 . Lsi04g01975 Csa04g02253 . Cme07g00491 . . . . . . . . . Cmo01g01327 Cmo09g00661 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007415 1 1 2 1 1 0 2 1 0 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 4 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01975 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g01975 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0