Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01978 ATGCCTGGGAATAAGTATAACGGTAACTCAAACGATATTTCAGACCGTATACCAGGTCGAGTGGAAAGGCTCTTGCGAGAGAGAAAGCTAAGGAAAAGCTGTAAGGATTCATATTCAAACGAGGTAAACGACTACAGTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTTGAAAGAGGAAGAAACCGTTGGAATTCCCTGTAAATTTTCGGAAGCTTCTGTAGCTTCGAGGGCCTTTGCCGAAGGATGTGACAAGCTAGATGGCAAGCCTCCCAGACAACGGCTACTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTTAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATTAGTGCTGGAGGTTTAGTGAGTGCACTTCTGGGGGTGAAGGAATTTGAGGCGAGATGGATTGGTTGGGCTGGTGTAAATGTACCAGATGAGGTGGGACAAAAGGCACTGACTGAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTCTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACTCGTAGCTTTCAGTCTCAGTTTGCTGCATACAAGAAGGCAAACCAAATGTTTGCTGATGTAGTGAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGTCTCAAGGAACATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCCTCTGAAATCCACAGAACCCTTCCGTCTCGATCAGAGCTTCTGCGCTCAGTACTTGCTGCTGATCTGGTTGGCTTTCACACATATGATTATGCTCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGACCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCGGATCGATTCATACGTGCCCTCAAGATTCCTGAAGTCCAGAAACATATTGAAGAGTTAAAGGAAAGATTCAAAGGTCGAAAGGTAATGCTAGGGGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCTTGGAGGAAAACCCTTATTGGCGTGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGTATTAATGGGAGATTTGGAACATTGACTACTGTGCCTATACATCATCTGGATCGTTCCCTCGATTTTCATGCACTATGTGCACTATATGCTGTAACTGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGCGAGTTCGCTGGTGCCGCACAATCTCTGGGTGCTGGAGCACTTTTGGTCAACCCATGGAACATAACAGAAGTCGCCAAATCAATTGATAGAGCATTAAATATGGATGCTGAAGAAAGAGAAAAACGCCATAGGCATAATTTTCTCCATGTGACGACGCACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAATGATACAGTCGTTGAAGCTGAACTGAGGATTCGACAATGTCCGCCCCTGCTTCCATTTGACAATGCAATTAAACATTATGAGCAATCTACTAATCGATTACTTATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACACCCGAGAGAAGAGGTGATCAGATTAGAGAGATGGATCTGAAACTACACCCGGATTTGAAAGAACCATTGACAGCAATTTGCAATGACCCAAATACGACAGTAGTCATTCTCAGTGGGAGCGACAGAACTGTCTTGGATGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTCACAAGGGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTCCGGGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGGTCCGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGATCAGCAATTGACCGAATATTGGGCGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCATCGGATACTATAGGCATGGCAAGAGCCAAGGGAACCGATGGACTTAAGTTAACGGGTGAGAGAAGACCTTCCATCAAAGTTCCTCTAAATAGGAATGGATCAAAATCGCCTCACAATAAAGGTCGGGCGAACTCAGAGAAGAAAACTTCAAATCATAACTGTGCAAACGGTCGTAAACCATCACCGGAGAAGATTCAATGGAATGTGCTTGATCTCAAGGCTGAGAACTACTTCTCTTGTGCTGTTGGACGAGCTCGCACGAATGCTCGGTATCTGCTCGGATCATCAGATGAGGTGGTGACATTCCTAAAGAAGTTGGCAGGTGCAAATGCATTTTCTTGA 2787 43.95 MPGNKYNGNSNDISDRIPGRVERLLRERKLRKSCKDSYSNEVNDYSKESELIENDLRLKEEETVGIPCKFSEASVASRAFAEGCDKLDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKIPEVQKHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIDRALNMDAEEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQCPPLLPFDNAIKHYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARAKGTDGLKLTGERRPSIKVPLNRNGSKSPHNKGRANSEKKTSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRARTNARYLLGSSDEVVTFLKKLAGANAFS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26807945 26826498 - Lsi04G019780.1 Lsi04g01978 662027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01978 928 CDD HAD_TPP 593 813 - -
Lsi04g01978 928 Gene3D Glycogen Phosphorylase B; 342 544 - -
Lsi04g01978 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Lsi04g01978 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824|GO:0005992
Lsi04g01978 928 Gene3D - 619 779 IPR023214 -
Lsi04g01978 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 922 - -
Lsi04g01978 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824|GO:0005992
Lsi04g01978 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Lsi04g01978 928 Coils Coil 35 62 - -
Lsi04g01978 928 MobiDBLite consensus disorder prediction 827 875 - -
Lsi04g01978 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 922 IPR001830 GO:0003824|GO:0005992
Lsi04g01978 928 Pfam Trehalose-phosphatase 618 820 IPR003337 GO:0003824|GO:0005992
Lsi04g01978 928 Gene3D Glycogen Phosphorylase B; 88 341 - -
Lsi04g01978 928 Gene3D - 685 765 - -
Lsi04g01978 928 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00848 Lsi-Chr2:7945172 Lsi04g01978 Lsi-Chr4:26807945 0 dispersed
Lsi04g01978 Lsi-Chr4:26807945 Lsi07g01179 Lsi-Chr7:17303864 7.60E-140 dispersed
Lsi04g01978 Lsi-Chr4:26807945 Lsi06g01540 Lsi-Chr6:25744451 1.17E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01978 K16055 - csv:101204478 1833.54