Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01979 ATGGAGATGTCTAACGACTCATCAATCAAGAAACCGAAGAGGTTGACATCGGTAGTTTGGAATCACTTTGAGAGGGTCAGAAAGGCTGACATTTGTTATGCTGTTTGTGTGCATTGTAACAAGAAGCTCAGTGGCTCAAGTAATAGCGGAACCACACATCTAAGAAATCACTTGATGCGATGTCTAAAAAGATCCAATTATGATGTTTCTCAACTACTTGCGGCCAAGAGATTAAAAAAGGACAGTTCAAGTGGTCTTGCAAACATCAGCTTTGATGAAGGGCAGAGAAAAGATGAGTTTAAATCAGCAATTGTGAAATATGATCCAGATCAGAGAAGGGATGAAGTAGTCACCATTGCAAGTAGTAAGTTTGATCAGGAGCGGAGTCAGAATGATCTTGCTCATATGATCATATTGCACGGTTATCCATTGTCTATTGTTGAGCATGTAGGGTTTAAAGTTTTTGTCAAAAACATTCAGCCGTTGTTTGAGGTATTACCCAATAGCACTGTTGAGGTTTCTTGTATGGAAATCTATCAGAAGGAGAAAGAGAAGATTTTTGAAACTATTAATAGATTGCAGGGTAGAATTAACGTTTCGGTTGAAATGTGGTCCTCATCAGAAAATATTGATTATTTATGCTTGGCTGCACATTATATTGACGAGGATTGGAAATTACAGAAGAAGCTTTTGAATTTTGTCACACTTGATTCTTCTCATACAGAGGACATGCTCTCAGACGTGATTATTAAATGCCTGATGGACTGGGACATTGACTGTTCAGCTTTGCGTGGAAGCAGTTTACCTGGGACGAGCAACGACTCTAGGGACAGGCTAAAAGGATTTGACAAGTTCCTTCATGAGACTTCTCAAGGTCAAAGTGTGATGTCTGATTTGGACAAATATTTAGAGGAACCAGTGTTTCCTCGAAACTGCGATTTCAACATATTAAACTGGTGGAAAGTCCACACCCCGAGGTACCCAATCTTGTCCATGATGGCTCGTGATGTTATCGGGACTCCAATGTCAAGCATTGCACCCGAGTTGGCATTTAGTACCAGAGGCCGAGTTCTCGACCGCTGTCGAAGTTCATTAAGCCCTGATACTCGTCAAGCTTTAATATGCGCACAAGATTGGCTTCGTATAGAACTTGAAGATCCGAGGCCATTGTCTACCGCTTCGTACATACCGCTCCTGCTCGGAACCAATTAA 1212 41.25 MEMSNDSSIKKPKRLTSVVWNHFERVRKADICYAVCVHCNKKLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLAAKRLKKDSSSGLANISFDEGQRKDEFKSAIVKYDPDQRRDEVVTIASSKFDQERSQNDLAHMIILHGYPLSIVEHVGFKVFVKNIQPLFEVLPNSTVEVSCMEIYQKEKEKIFETINRLQGRINVSVEMWSSSENIDYLCLAAHYIDEDWKLQKKLLNFVTLDSSHTEDMLSDVIIKCLMDWDIDCSALRGSSLPGTSNDSRDRLKGFDKFLHETSQGQSVMSDLDKYLEEPVFPRNCDFNILNWWKVHTPRYPILSMMARDVIGTPMSSIAPELAFSTRGRVLDRCRSSLSPDTRQALICAQDWLRIELEDPRPLSTASYIPLLLGTN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26848631 26851000 - Lsi04G019790.1 Lsi04g01979 662028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01979 403 Pfam hAT family C-terminal dimerisation region 298 380 IPR008906 GO:0046983
Lsi04g01979 403 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Lsi04g01979 403 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Lsi04g01979 403 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 2 260 - -
Lsi04g01979 403 Coils Coil 176 196 - -
Lsi04g01979 403 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Lsi04g01979 403 SMART bed5 14 64 - -
Lsi04g01979 403 PANTHER BED FINGER-RELATED 2 260 IPR045259 -
Lsi04g01979 403 PANTHER BED FINGER-RELATED 266 390 IPR045259 -
Lsi04g01979 403 SUPERFAMILY Ribonuclease H-like 184 260 IPR012337 -
Lsi04g01979 403 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 266 390 - -
Lsi04g01979 403 SUPERFAMILY Ribonuclease H-like 279 382 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01979 - - - csv:105435288 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01979 Lsi-Chr4:26848631 Lsi11g01646 Lsi-Chr11:24766775 5.39E-92 dispersed
Lsi04g01979 Lsi-Chr4:26848631 Lsi06g00998 Lsi-Chr6:20014962 9.83E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g29 . . . . . . . . . . . . . Car09g00597 . Cpe06g00527 . . . . . . . . Cla11g01688 Cam11g1752 Cec11g1776 Cco11g1777 Clacu11g1912 . Cre11g2133 . . . . Lsi04g01979 . . . . . . . . . . . . . Cmo09g00658 . . . . . . . . . . . . . . . . . . . . . . Chy07g00984 Cme07g01359
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000265 0 10 0 0 0 4 3 4 4 5 4 5 8 6 6 7 4 8 7 5 5 5 5 3 4 5 4 11 12 3 147
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01979 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.040536 0.0