Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01982 ATGTTTATATCTAAAACTCTTTTTGCTTCTTTCATTATTGGTTTCTTCTTCTTCAGTGATGGAATTCATTCTCAATCTACTAGATTGCCTACTGATGAAGTGGAAGCTTTAGAGGAAATAGGAAAGAGTTTGGGAAAAAGAGACTGGAATTTCAGTGCAGATCCTTGCAATGGATCCCATGGATGGATTACTCAACCCAACCAAATCCCTAACAATGTTGCTGGTTTTCAAAATAATCTCACCTGTGATTGCACCTTTCTCAATGCCACTGTCTGCCATATTATCAGCATAGTTCTCAAATCGCAGAGCCTTCAAGGCAGTCTCCCGTCCCATCTTGTCCGTTTGCCCTTTCTGCAGCAGATTGATCTCACTCGGAACTATCTCAGCGGCCAAATTCCTCCAGAATGGGGCTCTACGAATCTCGTCAGCATTTACCTTCTTGGAAATCGGTTGACGGGTTTGATTCCAGAGGAGATTGGGAACATCACTACTCTCGAGAATTTGGTCCTGGAAATCAATCAGCTCTCAGGAAGCATTCCTCAAGCGCTTGGAAATTTGCCCCAGATACAGAGATTGCATCTTACCTCGAACAACTTTTCTGGCGAGTTGCCAATGTCACTGGGAAAGCTGACCACACTGAAGGAATTTCGAATTGGTGACAATAACTTCTCTGGCCCAATACCGAATTTCATACGTAATTGGACAAATCTTACGGAACTGAGAATCAGTGACTTGAATGGAGCGTCATCACCCTTTCCACCTCTTAGTAATTTGAAGGACATGACAATTCTGATATTGAGAAGTTGCAATATCTCTGGAAGGCTTCCCAACTATCTGGATAGGATGCCATCATTGAAAATCTTAGACCTCAGCTTTAACAAACTAAGTGGACGAATTCCAACCAGATTTGATGCTCTTAAAGGGTTGGATAACATATTTTTAACTGGAAACATGCTAAATGGATCAGTGCCTGATTGGATGTTGAAAGGGAATGGCATCTTGGTACTACCTTTTGTAGCAAGTAACCTTTTTTCTGTTCTCACAGCTTGGTACTCCCTTCATATAAATTGTGGTGGGAAGGAACAAACCATAAATGAAACTACAGTTTTTAAAGGAGACCGAAACGCAGGTAGCTCTATGTTTTTTGTAACTGGAACAAATTGGGCAATCAGCAACACGGGTAGTTTTTTGGATGATGGTGGCTCTCGAGATGAATACACTGCAACAAATTCTTCTACTCTTTCTATGATAAATCCTGAACTGTACATGACTGCACGTGTTTCTCCATTATCTGTTACTTACTATGGGTTCTGTATGGGAAATGGAAACTACACAGTAAGCCTCCATTTTGCAGAGATAATGTTTACCGATGACAAAACATTCAGCAGTCTTGGCAGACGCATATTTAATGTTTATATTCAGAAAAAGCTGGTGCTAGAGAATTTCAATATAGCGGATGCAGCAGGTGGCATTGGTAAAGCAGTCATAAAAAAATTCCCAGTAACTGTTGTGAATGGTACTTTGGAGATCCGCTTCTATTGGGCAGGGAAGGGGACTAATGCCATCCCTGTGAGTGGGGTCTATGGTCCTCTTATATCAGCCATATCAGTAGATCCTGACTTTGAGCCTCCATTTGAAGGCGGAGGAACTGGAAAATCTGGTATATCCATAGGTGCAGTGATAGGCATCGCAGCTTCTGCGGTTTTTGTTATATTATTGGTCCTTGGAATCCTGTGGTGGAGCGGTGTTCTTGCGGATGGCACAACAATTGCAGTAAAGCAACTGTCTTCTAAATCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATTGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGCTGTATAGAAGGAAATCAGCTTTTGTTAGTATATGAATACATGGAAAACAATAGCCTTGCTCATGCCCTGTTTGGTCAAGAAGAAAGTGAACTAGAATTGAATTGGTCAACAAGGCAAAAGATCTGTGTTGGTATAGCAAGAGGTATGGCTTATCTTCATGAAGAGTCGAGACTAAAGATTGTCCACAGAGACATCAAAGCTACTAATGTTCTGTTAGACAAAGATCTAAATCCCAAGATATCCGACTTCGGCTTGGCCAAGCTTGATGAAGAAGAAAATACCCACATAAGCACTCGGATCGCTGGAACTTTTGGATACATGGCCCCAGAATATGCCATGCGAGGACACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTGTTGTGGCGTTAGAAATAGCACTGAAGTTGAAGGAAAAAAACAGTTTACTGGAGCTAGTTGATCCAAGGTTAAGCCCCAACTTTAACAAGGGAGAGGCACTGAGAATGATAAAAATTGCTCTCCACTGCACTAATATCTCTCCTGCAGCAAGACCTAACATGTCGTCAGTAGTGAGCATGTTGGAAGGTAGGCAGGCTATTGAGGACATAGTGTCAAATCCAAGTGTCACTAAAGAAGCAAGAAATGCAGCATGGACTTGTTTGTTGCAAGACGACGACGAGCAATCTAATAACGCAAGCCAGAAGCATGGTCTGTTTGCTGATGTTTCTGCAACAGGTTCTTCAACATCTGGAAGTGATCTCTATCCTATCAACGTATCTCAGTACTTGAATATTAGAGATACTAGACTATGA 2676 41.48 MFISKTLFASFIIGFFFFSDGIHSQSTRLPTDEVEALEEIGKSLGKRDWNFSADPCNGSHGWITQPNQIPNNVAGFQNNLTCDCTFLNATVCHIISIVLKSQSLQGSLPSHLVRLPFLQQIDLTRNYLSGQIPPEWGSTNLVSIYLLGNRLTGLIPEEIGNITTLENLVLEINQLSGSIPQALGNLPQIQRLHLTSNNFSGELPMSLGKLTTLKEFRIGDNNFSGPIPNFIRNWTNLTELRISDLNGASSPFPPLSNLKDMTILILRSCNISGRLPNYLDRMPSLKILDLSFNKLSGRIPTRFDALKGLDNIFLTGNMLNGSVPDWMLKGNGILVLPFVASNLFSVLTAWYSLHINCGGKEQTINETTVFKGDRNAGSSMFFVTGTNWAISNTGSFLDDGGSRDEYTATNSSTLSMINPELYMTARVSPLSVTYYGFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRIFNVYIQKKLVLENFNIADAAGGIGKAVIKKFPVTVVNGTLEIRFYWAGKGTNAIPVSGVYGPLISAISVDPDFEPPFEGGGTGKSGISIGAVIGIAASAVFVILLVLGILWWSGVLADGTTIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLAHALFGQEESELELNWSTRQKICVGIARGMAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGVVALEIALKLKEKNSLLELVDPRLSPNFNKGEALRMIKIALHCTNISPAARPNMSSVVSMLEGRQAIEDIVSNPSVTKEARNAAWTCLLQDDDEQSNNASQKHGLFADVSATGSSTSGSDLYPINVSQYLNIRDTRL 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26865826 26876709 - Lsi04G019820.1 Lsi04g01982 662031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01982 891 Gene3D Ribonuclease Inhibitor 33 332 IPR032675 -
Lsi04g01982 891 Gene3D Phosphorylase Kinase; domain 1 579 641 - -
Lsi04g01982 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Lsi04g01982 891 SUPERFAMILY Protein kinase-like (PK-like) 584 815 IPR011009 -
Lsi04g01982 891 Pfam Malectin domain 352 535 IPR021720 -
Lsi04g01982 891 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 341 500 - -
Lsi04g01982 891 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 270 325 - -
Lsi04g01982 891 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 82 271 - -
Lsi04g01982 891 Pfam Protein tyrosine and serine/threonine kinase 587 815 IPR001245 GO:0004672|GO:0006468
Lsi04g01982 891 ProSiteProfiles Protein kinase domain profile. 555 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01982 891 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 341 500 - -
Lsi04g01982 891 Gene3D - 350 539 - -
Lsi04g01982 891 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 581 760 - -
Lsi04g01982 891 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 767 858 - -
Lsi04g01982 891 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 581 760 - -
Lsi04g01982 891 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 271 - -
Lsi04g01982 891 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 767 858 - -
Lsi04g01982 891 Gene3D Transferase(Phosphotransferase) domain 1 642 831 - -
Lsi04g01982 891 SUPERFAMILY L domain-like 78 332 - -
Lsi04g01982 891 SMART serkin_6 555 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01982 891 CDD STKc_IRAK 582 817 - -
Lsi04g01982 891 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 270 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01982 Lsi-Chr4:26865826 Lsi04g01985 Lsi-Chr4:26916892 0 dispersed
Lsi04g01982 Lsi-Chr4:26865826 Lsi04g01983 Lsi-Chr4:26885775 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83599 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01982 - - csv:101220843 1226.46