Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01983 ATGTTGGCTCTTCCTCCATTTCCATCCCTTCTCGTTGTTTCCCTCCTTCTCTTTGGCTCTCTCACTGTTCTCGCCTCTAAAAATGCAAAATTGCCTCCTGAAGAAGCCGAAGGTTTCTGGACTGTGATGAACGAATTACAAAAGGCGAAGTGGAATTACAGTTTACGTCCATGCGATGTAGGGTTTGGTGGGTCTCCCGGTTTCAACGAAAGTAATTTTATGAATGCAAATAACATCACCTGTAGTTGCTCCTATGAGAATGCTACCGTCTGCCACATCACCCATATATATCTGAAGGCCCAGAGTTTGGCAGGCGTAGTACCAACTCAACTCTTCTTGTTACCTTATCTGGAGGAACTCGATCTCACTCGGAACTATCTTAGCGGTCAAATTCCTCGCGAATGGGGCTCCATGAAGCTTGTCAGAATTTCTCTGCTCGGAAATCGACTGACGGGTTCGGTTCCACACGAGATTGGAAACATCACTACTCTTAAAGACTTAGTCCTAGAAAACAATCAACTATCAGGAAGCTTACCTCCAGCACTTGGAAATTTGCTGAGCTTGGAAAGATTACTTCTTTCCTCCAACAACTTCACTGGGGAGCTCCCGGCGTCTTTGAGAATGCTCACCTCTTTGATCGACTTGCAAATTCAAGCAAGTGGGTTGAGTGGGCCGCTTCCTTCTGAAATTGGGCTTCTGAAAAACTTAGTCGACCTGAGGATAAGTGACTTGAATGGAGCTTCATCACCCTTTCCGTCGCTTAACAATTTGACCTTTTTGAAACTTTTAATATTGAGAAATTGCAATATAACAGGAGTGCTGCCTGATAATCTTGGTGGGATGAATTTTTTGAAGATCCTAGACCTCAGCTTTAACAAAATAAGTGGGCGTATTCCTCCCAGTTTCCATAGCCTTGTCAAGGTGGATGCAATATTTTTAACTGGAAATTTGCTAAATGGAACGGTACCTGATTGGATGGTGCTTCAAGGAGAGAGCATTGATCTCTCTTATAATAAGTTTACACCACTCTCTACAGCTACAGGCTGTCAATCACGAAATCTGAACTTATTCGCAAGCTCTGCACTTGACAATAATTCTAACCTTGTATCTTGTTTGCCGAACCGCATGTGTGCCCAAGTTAAGTCCCGTCTCCATATAAATTGTGGTGGGAAGGAAGAAACCATCGATGGTGTTACGTTTGAAGGAGATGAAGATACAGGCAAATCATCACAGTTTTTCTCAAGTGAAACAAATTGGGGATTTAGTAATACTGGCAATTTTGTGGATGATGATCGTAGTACAGATGACTATATTGCTAGGAGTTCATCTGCCTTGTCTCTGGCAAATTCCACACTGTATGAGACTGCTCGAATTTCTCCACTGTCTCTTACATACTATATGTATTGCATGGCAACTGGAAACTACACAATAAGCCTCCATTTTGCAGAAATAATGTTTACCAATGATAAAAATTATAGCAGCCTTGGAAGGCGCATTTTTGATGTTTATGTGCAGGAAAGGCTGGTGCTGAAGGATTTTAATATTGTAGATGATGCAGGTGGTATAGGCAAACCTGTCATAAAAAAAATTCCTGTTGCTATTACTAGTGGTACTTTGGAGATACGATTTTATTGGGCTGGGAAGGGGACAGTTAGTATCCCTGTAAGGGGAGTCTATGGTCCTCTGATTTCAGCTATTTCAGTAGATTCTGAGTCTCCGTCAGAAGGTCGCAGTACCTTACCTGTAGGTGCAATTGTTGGAATTTTGGCTGTAGTGGCCTTCATTATAATTTTGGCTCTTGGAGTTTTGTGGCGGAAATGTTATCGTGGAAGGAAAAGTGCACATCAACAAGATTTGAAGGGTCAAAATCTACTAATTGGTTCATTTTCATTAAAGCAAATTGCAACTGCGACAAATAACTTTGACGCTGCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTTGTGGATGGTACCATGATTGCAGTGAAGCAACTTTCTGCAAAGTCAAAACAAGGAAACCGTGAATTTGTGAATGAGATAGGCTTGATATCTTCTGTCAAACACCCACATCTAGTTACGCTTTATGGATGTTGCACTGAATCAGATCAGCTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCCCAAGCTCTCTTTGGAGTCCAAGGAAGTCAATTAAAATTGGATTGGGCAACAAGGCAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCACGAGGAGTCAAGATTGAAGATCGTTCACCGAGATATCAAAGGTACTAATGTATTGTTAGATAAAAACCTCAACCCAAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACCCACATAAGCACTCGAATTGCTGGAACATTCGGATATATGGTCCCAGAATATGCAACACGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATTGTAACATTGGAAATAGTTAGTGGAAGGAACAACACTATATATCGGTCAAAGGAAAAGCGTCTTTATCTTTTTGATTGGGTAACTTGA 2580 40.93 MLALPPFPSLLVVSLLLFGSLTVLASKNAKLPPEEAEGFWTVMNELQKAKWNYSLRPCDVGFGGSPGFNESNFMNANNITCSCSYENATVCHITHIYLKAQSLAGVVPTQLFLLPYLEELDLTRNYLSGQIPREWGSMKLVRISLLGNRLTGSVPHEIGNITTLKDLVLENNQLSGSLPPALGNLLSLERLLLSSNNFTGELPASLRMLTSLIDLQIQASGLSGPLPSEIGLLKNLVDLRISDLNGASSPFPSLNNLTFLKLLILRNCNITGVLPDNLGGMNFLKILDLSFNKISGRIPPSFHSLVKVDAIFLTGNLLNGTVPDWMVLQGESIDLSYNKFTPLSTATGCQSRNLNLFASSALDNNSNLVSCLPNRMCAQVKSRLHINCGGKEETIDGVTFEGDEDTGKSSQFFSSETNWGFSNTGNFVDDDRSTDDYIARSSSALSLANSTLYETARISPLSLTYYMYCMATGNYTISLHFAEIMFTNDKNYSSLGRRIFDVYVQERLVLKDFNIVDDAGGIGKPVIKKIPVAITSGTLEIRFYWAGKGTVSIPVRGVYGPLISAISVDSESPSEGRSTLPVGAIVGILAVVAFIIILALGVLWRKCYRGRKSAHQQDLKGQNLLIGSFSLKQIATATNNFDAANKIGEGGFGPVYKGILVDGTMIAVKQLSAKSKQGNREFVNEIGLISSVKHPHLVTLYGCCTESDQLLLVYEYMENNSLAQALFGVQGSQLKLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGTNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMVPEYATRGYLTDKADVYSFGIVTLEIVSGRNNTIYRSKEKRLYLFDWVT 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26885775 26910538 - Lsi04G019830.1 Lsi04g01983 662032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01983 859 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 270 325 - -
Lsi04g01983 859 SMART serkin_6 641 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01983 859 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 270 325 - -
Lsi04g01983 859 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 81 270 - -
Lsi04g01983 859 Gene3D Ribonuclease Inhibitor 205 379 IPR032675 -
Lsi04g01983 859 Pfam Malectin domain 384 566 IPR021720 -
Lsi04g01983 859 SUPERFAMILY Protein kinase-like (PK-like) 624 847 IPR011009 -
Lsi04g01983 859 SUPERFAMILY L domain-like 87 345 - -
Lsi04g01983 859 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 366 858 - -
Lsi04g01983 859 Pfam Leucine rich repeat 260 318 IPR001611 GO:0005515
Lsi04g01983 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Lsi04g01983 859 Gene3D Transferase(Phosphotransferase) domain 1 717 859 - -
Lsi04g01983 859 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 270 - -
Lsi04g01983 859 Gene3D - 381 571 - -
Lsi04g01983 859 Gene3D Phosphorylase Kinase; domain 1 604 716 - -
Lsi04g01983 859 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 366 858 - -
Lsi04g01983 859 ProSiteProfiles Protein kinase domain profile. 641 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01983 859 Gene3D Ribonuclease Inhibitor 63 204 IPR032675 -
Lsi04g01983 859 Pfam Protein kinase domain 644 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01983 Lsi-Chr4:26885775 Lsi04g01986 Lsi-Chr4:26937585 2.89E-10 dispersed
Lsi04g01982 Lsi-Chr4:26865826 Lsi04g01983 Lsi-Chr4:26885775 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83600 PF00069 Pkinase 4.20E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01983 - - csv:101221782 1061.6