Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01985 ATGTTCATGGCTCGATTCCTCGCCGTCTTTCTTCTCTTTTCTTTGGTTTCCGCCGCCGCTCAGCTGCCGGCCGACGAAGTTGAGGCGTTAAGGGAGATCGGAAAGGTATTGGGGAAAGATGACTGGAATTTCTCGGCGGATCCATGCGGCGGTTTGGGTAGCGGTTGGATATCCAATTCTTTCGAAACGGGTTTTGTTAATAATATCACCTGCGACTGCACCTTCCAGAATAATGCCGTTTGTCACGTCACTAAAATGCGTCTAAGGTCACAGAATCTTCCAGGTGTTCTGCCACCGCAAATGGTGAGGCTGCCTTACTTGCAAGAACTCGATCTTTCCCGCAACTATCTCAGCGGCCCAATTCCTCCAGAATGGGGTGCCACAAAGCTTGTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTTATCCTTGAAGTCAATCAGTTATCTGGAAGTCTACCTCCAGAACTTGGAAACTTGGAAAGCTTATCAAGATTACTTCTTTGCTCAAACAATTTTTCTGGGGAGCTCCCATCTTCACTGGGAAGGATAACCAATTTGATGGACTTTCGAATTAGTGATAATCACTTCACAGGAACAATTCCTAAGTATATTCAGAATTGGTCGAATCTTTCAAGACTAGGTATTCAGGCAAGCGGGCTGAGTGGACCAATTCCTTCTGAAATTGGACTTTTGACACAATTAGTTGATCTGAGAATCAGCGACTTGAATGGAGATTCATCGCCCTTTCCACCCCTTAATTCTTTGACAAAATTGAAAACCCTAGACTTCAGCTTCAACAAAATTAGTGGACCAATACCTGGCGAATTTGAAGCTTTGAAAAAAGTGGATAGAATATATTTATCTGGAAACTTGCTAACTGGAGCTGTGCCTCCTTGGATGCTGCAGGAGGGAGAAAACATGATGGAGGAGTTAGTTTTAGTTCTTCGTATCTACAAGATTATAAATCTCATTGTTCTTTGTTTCAGTGATCTCTCTTATAACACATTTACTGGGACAGATTTTGAGGCCTTGGGTTGTGAAGCACGAAGTTTAAACCTGTTCGCGAGCTCTTCACAGGACAATACTTCTGGAACAGTTTCATGTTTAGCGGGCACATGTGACAAAACTTGGTACTCTCTCCATATCAATTGCGGTGGGAAGGAAGATTTAATAAACAGAACAATCAGGTTTGATGGAGACACAAACACGGGGAAATCAACACTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACTGGTAGTTTTATGGACGATGATCGCTCAACAGACGACTTCATTGCATTAAGTTTACCTGATCTCCCAATGAAAGATCTTGGATTGTACACCAATGCACGGATTTCTCCCATCTCTCTTACTTATTATGCATATTGCATGGGTAATGGAAACTACACAGTAAGCCTCCATTTTGCTGAGATAGAGTTTAGTAATGACAAATCATACAAAAGCTTTGGCAGACGCATATTTGATGTCTACGTTCAGAGAGAGCTGGTGTTGAAGGATTTTAATATTGCAGAGGAAGCAGGTGGTGTTGGCAAACCTCTTGTAAAGAAATTCACTGTTTCTGTGACTAATGGTACTGTAGAGATCCGCCTATTTTGGGCTGGGAAGGGGACAAATGCAATCCCTACAAGAGGAATTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTTGATCCACCATCAGAAGGTGGAAATGTCATATCTGCCGCTGCAGTTGGAATTGTGGTTGCTGTGGTCTTTGTTATCATCTTGCTTCTTGGAGTCTTGTGGTGGAGAGGCAGCCAAAGAACGAAAAGCACACTTGAACAAGAGTTGAAGGACCTCGATCTCGGAACAGGATCATTTTCATTAAGACAAATCAAAGCTTCCACTAACAATTTTGATGTTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGCGTTCTTTCCGATGGCAGTGTAATTGCAGTGAAGCAACTTTCTTCAAAGTCAAAGCAAGGAAATCGTGAATTTTTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAGATCAACTTTTGCTAATATACGAGTATCTGGAAAATAATAGCCTTGCCCGCGCCTTATTCGGACCTGAAGAATGTCAACTGAAATTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTAGCATACCTTCATGACGAGTCAAGACTAAAGATCGTTCACCGTGACATCAAAGCTACCAATGTTCTTCTCGATAAAAATCTAAACCCGAAAATTTCCGACTTTGGTTTGGCCAGGCTAGATGAAGAAGGAAATACACACATCAGCACACGGGTTGCCGGAACCTATGGATATATGGCACCAGAATATGCCATGCGAGGCTACTTAACTGACAAAGCAGATGTTTATAGTTTTGGTGTGGTAGCGTTAGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTGGAACCAAGGATGATTGCTTATACCTTCTTGATTATGCTAACGTTTTAAAAGAGAGAGGGAATTTACTAGACCTTGTCGATCCACGGTTAGGCTCTGAATTCAACAAGAAAGAGGCAATGATGATGATCAATATCGCCCTCCAATGCACGAACATCAATGCTGCAGACAGACCCTCCATGTCAATAGTAGTAGGCATGCTGGAAGGGAAGATTGCTATGGAGGAGTTAGTTTCAGATCCAAATATCTCAAAGCAAGATGTGAATGCAATGTGGAGCCATATGTACCGCCAGAAAGTGAAAACCGTGGGCGAGAGTGAGACACAAAGTATGTTGACATGTGAGAGCGAGAGCGAGAGCGAGACCCGAAGTATGTTGATGGATGGACCATGGACTGATTCTTCAATTACTGACAGTGATTGCCATCCCATCATGGTTAATTCTAAATAG 3024 42.56 MFMARFLAVFLLFSLVSAAAQLPADEVEALREIGKVLGKDDWNFSADPCGGLGSGWISNSFETGFVNNITCDCTFQNNAVCHVTKMRLRSQNLPGVLPPQMVRLPYLQELDLSRNYLSGPIPPEWGATKLVNISLLGNRLTGPIPKEIGNISTLVEFILEVNQLSGSLPPELGNLESLSRLLLCSNNFSGELPSSLGRITNLMDFRISDNHFTGTIPKYIQNWSNLSRLGIQASGLSGPIPSEIGLLTQLVDLRISDLNGDSSPFPPLNSLTKLKTLDFSFNKISGPIPGEFEALKKVDRIYLSGNLLTGAVPPWMLQEGENMMEELVLVLRIYKIINLIVLCFSDLSYNTFTGTDFEALGCEARSLNLFASSSQDNTSGTVSCLAGTCDKTWYSLHINCGGKEDLINRTIRFDGDTNTGKSTLFFQGGANWGFSNTGSFMDDDRSTDDFIALSLPDLPMKDLGLYTNARISPISLTYYAYCMGNGNYTVSLHFAEIEFSNDKSYKSFGRRIFDVYVQRELVLKDFNIAEEAGGVGKPLVKKFTVSVTNGTVEIRLFWAGKGTNAIPTRGIYGPLISAISVDPDFDPPSEGGNVISAAAVGIVVAVVFVIILLLGVLWWRGSQRTKSTLEQELKDLDLGTGSFSLRQIKASTNNFDVANKIGEGGFGPVYKGVLSDGSVIAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGDQLLLIYEYLENNSLARALFGPEECQLKLDWPTRQKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNPKISDFGLARLDEEGNTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGVVALEIVGGRSNTSFGTKDDCLYLLDYANVLKERGNLLDLVDPRLGSEFNKKEAMMMINIALQCTNINAADRPSMSIVVGMLEGKIAMEELVSDPNISKQDVNAMWSHMYRQKVKTVGESETQSMLTCESESESETRSMLMDGPWTDSSITDSDCHPIMVNSK 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26916892 26935785 - Lsi04G019850.1 Lsi04g01985 662034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01985 1007 SUPERFAMILY L domain-like 68 350 - -
Lsi04g01985 1007 CDD STKc_IRAK 661 928 - -
Lsi04g01985 1007 Gene3D Transferase(Phosphotransferase) domain 1 731 941 - -
Lsi04g01985 1007 MobiDBLite consensus disorder prediction 973 997 - -
Lsi04g01985 1007 ProSiteProfiles Protein kinase domain profile. 655 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01985 1007 Gene3D Ribonuclease Inhibitor 153 220 IPR032675 -
Lsi04g01985 1007 Gene3D Ribonuclease Inhibitor 29 152 IPR032675 -
Lsi04g01985 1007 SMART serkin_6 655 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01985 1007 Gene3D - 392 583 - -
Lsi04g01985 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 71 973 - -
Lsi04g01985 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Lsi04g01985 1007 SUPERFAMILY Protein kinase-like (PK-like) 639 943 IPR011009 -
Lsi04g01985 1007 Pfam Protein tyrosine and serine/threonine kinase 657 924 IPR001245 GO:0004672|GO:0006468
Lsi04g01985 1007 Pfam Malectin domain 395 579 IPR021720 -
Lsi04g01985 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 973 - -
Lsi04g01985 1007 Gene3D Ribonuclease Inhibitor 221 385 IPR032675 -
Lsi04g01985 1007 Gene3D Phosphorylase Kinase; domain 1 619 730 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01982 Lsi-Chr4:26865826 Lsi04g01985 Lsi-Chr4:26916892 0 dispersed
Lsi04g01985 Lsi-Chr4:26916892 Lsi11g01653 Lsi-Chr11:24830084 0 dispersed
Lsi04g01984 Lsi-Chr4:26913871 Lsi04g01985 Lsi-Chr4:26916892 2.97E-40 tandem
Lsi04g01985 Lsi-Chr4:26916892 Lsi04g01986 Lsi-Chr4:26937585 1.50E-06 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83601 PF07714 PK_Tyr_Ser-Thr 4.10E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01985 - - cmo:103501834 1566.98