Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01986 ATGACTAGTAATAGTGAAAAGACGGATGAAGGTGCAAATCGATCAGGTAGTTTTCTTTCCATTCAGACCTTCATCCAACTGCAATTCATTAATCATCCTTTCTCTTTCTCCTCTTCACTCATACAAATCCACCGTCGCCGTCGCCGTCGTCGAGCCATGCTGTTGGCTCGACTCTTCGCCGTCGTTTTTCTCTCATCTCTCTGCTTTGTAACCCTCACTTCCGGAGCCGCTCGGCTGCCGGCCGACGAAGCGGAAGCGTTGGAGGAGATCGGAAGGACATTGGGGAAGACGGGCTGGGATTTCACCGCCGATCCATGCGGCGGCGTTAGTAGCGGTTGGATATCGAATTCCAAACAATTCGATACTAATTTTGCTAATAATGTCACGTGCGACTGCAGGTTCCAGAATAATACCGTCTGTCACGTCACTATCATGTACGCTTTCTCTCATTTTCCACTTTTTTTATTTTTTAGATCAATCATAACGTCCCACGTTGGCAACTGGACAACTGGATATATAAATAAAATACAACCTCAGTTAACTCTTCGTCCACGTGACGACGGCCTTCTGTTTCTTGCAAATTTAAATATAGTTCTTCTGAAGGCGCAGAACCTTCAAGGTACTCTGCCACCGCAAATTGTGAGGTTGCCTTTCCTCCAGGAACTTGATCTCACCCGCAACTTTCTCAGCGGCCCGATTCCTCCAGAATGGGGTTCAACCAAGCTTCTCAAAATTTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGCGATTGGAAACATCAGTACTCTTACAGACTTGGTTTTGGAAATGAATCATTTCTCTGGAAGTATACCTCCAGAACTTGGGAATTTGACCAACTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGTGAGCTCCCATCTTCCTTGGCTAGGATGACCTCATTGACAGACTTTCGAATTGGTGATAATCACTTTACAGGACCAATACCTAAGTTTATTCAGAATTGGACGAATCTTGGAAAAGTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGTGACTTGAACGGAGGTTCATCGCCCTTTCCACCCCTTAATACTTTGACAAAATTGAAAGTCCTGATATTGAGGAGTTGCAATATAACTGGGATGCTGCCCAACAATCTTGCTGGGTTGACATCATTGAAAACCTTAGACTTCAGCTTCAACAAAATTACTGGACAAATACCTGACAGCTTTGAGGCGTTAAAAAAAGTGGATAGCATATATCTAACTGGAAACTTGCTAAACGGATCAGTGCCCACTTGGATGCTAGATCAAGGAGAAAGCATGATGTTGGGGAAGGGAAATGATCTCTCTTATAACAAATTTACTGAGAGAAATGGTCAGAACACTGGTTGCCAATCACGAAATTTAAACCTGTTTGCAAGCTCTTCACGGGACAATAATTCTGGAACAGTTTCATGTTTAGGTGCTTGTCAAAAAACTTGGTACTCTGTCCATATCAACTGCGGTGGGAATGAAGTAATTAATGGAACAACCAAATTTGATGCGGACACAAACACTGGAAGATCATCATTGTTTAATCCAGGTGGAGCAAATTGGGGAGTTAGCAACACTGGCAATTTTATGGATGATGATCGCACAACAGACGATTTTATTGCATTGAACTCATCTGCTCTCTCAATACCAAATCCTGAATTGTACATGAGGGCACGCATTTCTCCAATCTCTCTTGCTTATTATGCATATTGCTTGGGTACTGGAAACTACACAATAAGCCTCCATTTTGCTGAGATAATGTTTACTAATGACAAAACATACAGTAGCCTTGGCAGACGTTACTTTGATGTCTACGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTATTGGCAAACCTTTTGTAAAGAAATTCACAGTTTCTGTGACTAATGGTACCATAGAGATTCGCCTATTTTGGGCTGGGAAGGGGACAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCCGCCATATCTATTGATCCTGACTTTAAGCCACCGTCAGAAGGTGGAAATGCCATATCTGCTGGTGCAGTGGTTGGAATTGTGCTTGCTGTGGTCTTTGTTATCATCTTGGTTCTTGGAGTGTTATGGTGGAGAGGCTGCCTAAGAAAGACAAGCACACTTGAACAAGGTAATTTCATTGCATGTGTTGTGAAATTCTTACCGTTACTAATTGGTCTAGATCTAGGAACAGGTTCATTTTCATTAAGACAAATCAGAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATCGGAGAAGGTGGTTTTGGTCCTGTTTTCAAGGGTGTTCTTGCAGATGGCACCGTAATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAACCGTGAATTTGTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTAATATACGAGTATATGGAAAACAATAGCCTTGCTCGGGCCTTATTCGGACCTGAAGAATGTCAGCTGAAATTGGATTGGCCAACTAGGCAAAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTTAAAATCGTCCACCGAGACATCAAAGCTACGAATGTTCTCCTCGATAAAAATCTCAACCCCAAGATTTCTGACTTCGGTTTGGCTAAGCTGGATGAAGAAGAAAATACACATATCAGCACCCGGGTTGCTGGAACCTATGGGTATATGGCACCAGAATACGCCATGCGAGGCTACTTAACTGATAAGGCAGATGTGTACAGCTTTGGCATTGTGGCTTTGGAGATAGTTAGTGGTCGAAGCAACACAAGTTTCCGAACAAAGGATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAGAGACAATTTATTAGAGCTTGTCGATCCACGGTTAGGCTCTGATTTCAACAAGAGAGAGGCAATGACGATGATCAATATTGCTCTCCATTGCACAAACGTCATTGCTGGTGACAGACCTGCAATGTCATCAGTGGTGAGCATGCTGGAGGGGAAGGTTGCTACGAAGGAGGTGGTTTCAGATCCTAGTGTCTCAAAACAAGATGTGAATGCAATGTGGAGCCAGATTTATCGCCAGAAAGGGGAAACGACGAGTGAAAGCCAGACGCAAAGTTTGACGATGGATGGTCCATGGACTGCTTCAACAACTGCCACTATGTTAGCCTTCAAATGCTTTGATGCATGCTTATTTTTTTGTTGTTCTACAGATGCATTTTCCCCCTTTTTAAGTGGCAGTACCGTGGCTAATGGCCAATCTCTTGCCAATTACTGTATATTTGAAATTCGTTGTTTTACAATCTCCCTTCTTGGAAATCGATTGACGGGTCCAATCCCAAAAGCGATTGGAAACATCAGCACTCTTACAGAGTTGGTTTTGGAAATGAATCATTTCTCTGGAATTATACCTCCAGAACTTGGGAATTTGTCCAACTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGGAAGGATAACGACATTAATGGATTTTCGAATTAGTGATAATCACTTTACAGGGCCAATACCTAAGTTTATTCAGAATTGGACGAATCTTGTAAAAGTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAATTTAACTGATGTGAGAATCAGCGACTTGAATGGACTTTCATCCCCCTTTCCACCCCTTAATAATTCGACAGAGTTGGAAGTCCTGATATTGAGGAGTTGCAATATAACTGGGATGCTGCCCGACAGTCTTGCTGGGTTGACATCATTGAAAACCTTGTCAAAGGCTTATCAAGACAAATGGCTACATTTGTCCCTTACTTTCATCAATAAAAATGCAGCAGGTGGTATTGGCAAACCTTTTGTAAAGAACTTCACAGTTTTGGTGTCTAATGGTACTATAGAGATCCGCCTATTCTGGGCTGGGAAGGGGACAAATGCAATCCCTGTGAGAGGAGTTTATGGTCCTTTAATTTCCGCCATTTCTATTGATTTTGACATTATTGATCATGGAAATGCCATATCTGTCGGTGCAGTGGTTGGAATTGTGGCTGCTGTGGTCTTTGTTATCATCTTGGTTCTTGGAGTGTTGTGGGTGTTTTCCGTAATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATATCTGCATTGCAGCACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTACTAATATATGAGTATCTGGAAAATAATAGCCTTGCTCGTGCCTTATTCGGACCTGAAGAATGTCAACTGAAATTGGATTGGCCAACTAGGCAAAAGATTTGTGTTGATATAGCCAGAGGTTTAGCATACCTTCATGAGGAGTCAAGACTTAAGATCGTTCACCGAGACATCAAAGCTACCAATGTTCTGCTCGATAAAAATTTCAACCCCAAGATTTCCGATTTCGGTTTGGCCAAGCTGGACGAAGAAGAAAATACACACATCAGCACCAGGATTGCTGGAACCTTTGGGTATATGGCACTAGAACATGCCATGCGAGGCTACTTAACTGACAAAGCAGATGTCTACAGCTTTGGCATTGTGGCGTTGGAGATAGTTAGTGGTCGAAGGAACACAAGTTTCCGAACCAAGCATGATTGCTTTTACCTTCTTGACCATGCTAATACTTTAAAAGAGAAAGACAGTATATTAGAGCTTGTCGATCCACGTGACAGACCTGCCATGTCATCGGTGGTGAGCATGCTGGAGGGGAAGGTTGCTGTGAAGGAGGTGGTTTCCGATCCCAGTGTCCCAAAACAAGATGTGAATGCAATGTGGAGCCAGATTTATCTCCAGTAA 5070 42.23 MTSNSEKTDEGANRSGSFLSIQTFIQLQFINHPFSFSSSLIQIHRRRRRRRAMLLARLFAVVFLSSLCFVTLTSGAARLPADEAEALEEIGRTLGKTGWDFTADPCGGVSSGWISNSKQFDTNFANNVTCDCRFQNNTVCHVTIMYAFSHFPLFLFFRSIITSHVGNWTTGYINKIQPQLTLRPRDDGLLFLANLNIVLLKAQNLQGTLPPQIVRLPFLQELDLTRNFLSGPIPPEWGSTKLLKISLLGNRLTGPIPKAIGNISTLTDLVLEMNHFSGSIPPELGNLTNLSRLLLTSNNFSGELPSSLARMTSLTDFRIGDNHFTGPIPKFIQNWTNLGKVAIQASGLSGPIPSEIGLLTKLTDVRISDLNGGSSPFPPLNTLTKLKVLILRSCNITGMLPNNLAGLTSLKTLDFSFNKITGQIPDSFEALKKVDSIYLTGNLLNGSVPTWMLDQGESMMLGKGNDLSYNKFTERNGQNTGCQSRNLNLFASSSRDNNSGTVSCLGACQKTWYSVHINCGGNEVINGTTKFDADTNTGRSSLFNPGGANWGVSNTGNFMDDDRTTDDFIALNSSALSIPNPELYMRARISPISLAYYAYCLGTGNYTISLHFAEIMFTNDKTYSSLGRRYFDVYVQGKLELKDFNIADAAGGIGKPFVKKFTVSVTNGTIEIRLFWAGKGTNAIPVRGVYGPLISAISIDPDFKPPSEGGNAISAGAVVGIVLAVVFVIILVLGVLWWRGCLRKTSTLEQGNFIACVVKFLPLLIGLDLGTGSFSLRQIRAATNNFDAANKIGEGGFGPVFKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSFRTKDDCFYLLDHANTLKERDNLLELVDPRLGSDFNKREAMTMINIALHCTNVIAGDRPAMSSVVSMLEGKVATKEVVSDPSVSKQDVNAMWSQIYRQKGETTSESQTQSLTMDGPWTASTTATMLAFKCFDACLFFCCSTDAFSPFLSGSTVANGQSLANYCIFEIRCFTISLLGNRLTGPIPKAIGNISTLTELVLEMNHFSGIIPPELGNLSNLSRLLLTSNNFSGELPSSLGRITTLMDFRISDNHFTGPIPKFIQNWTNLVKVAIQASGLSGPIPSEIGLLTNLTDVRISDLNGLSSPFPPLNNSTELEVLILRSCNITGMLPDSLAGLTSLKTLSKAYQDKWLHLSLTFINKNAAGGIGKPFVKNFTVLVSNGTIEIRLFWAGKGTNAIPVRGVYGPLISAISIDFDIIDHGNAISVGAVVGIVAAVVFVIILVLGVLWVFSVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPEECQLKLDWPTRQKICVDIARGLAYLHEESRLKIVHRDIKATNVLLDKNFNPKISDFGLAKLDEEENTHISTRIAGTFGYMALEHAMRGYLTDKADVYSFGIVALEIVSGRRNTSFRTKHDCFYLLDHANTLKEKDSILELVDPRDRPAMSSVVSMLEGKVAVKEVVSDPSVPKQDVNAMWSQIYLQ 1689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26937585 26959305 - Lsi04G019860.1 Lsi04g01986 662035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01986 1689 Gene3D - 511 701 - -
Lsi04g01986 1689 SMART serkin_6 786 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01986 1689 SMART serkin_6 1424 1659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01986 1689 Gene3D Ribonuclease Inhibitor 184 504 IPR032675 -
Lsi04g01986 1689 Gene3D Ribonuclease Inhibitor 1233 1346 IPR032675 -
Lsi04g01986 1689 Gene3D Transferase(Phosphotransferase) domain 1 862 1080 - -
Lsi04g01986 1689 Pfam Malectin domain 514 697 IPR021720 -
Lsi04g01986 1689 Pfam Malectin domain 1349 1397 IPR021720 -
Lsi04g01986 1689 Gene3D Transferase(Phosphotransferase) domain 1 1491 1671 - -
Lsi04g01986 1689 SUPERFAMILY Protein kinase-like (PK-like) 1436 1674 IPR011009 -
Lsi04g01986 1689 SUPERFAMILY Protein kinase-like (PK-like) 771 1078 IPR011009 -
Lsi04g01986 1689 CDD STKc_IRAK 792 1059 - -
Lsi04g01986 1689 Pfam Protein tyrosine and serine/threonine kinase 1439 1637 IPR001245 GO:0004672|GO:0006468
Lsi04g01986 1689 Pfam Protein tyrosine and serine/threonine kinase 789 1056 IPR001245 GO:0004672|GO:0006468
Lsi04g01986 1689 ProSiteProfiles Protein kinase domain profile. 1404 1689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01986 1689 SUPERFAMILY L domain-like 189 451 - -
Lsi04g01986 1689 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 491 1096 - -
Lsi04g01986 1689 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1159 1333 - -
Lsi04g01986 1689 Pfam Leucine rich repeat 385 444 IPR001611 GO:0005515
Lsi04g01986 1689 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 183 396 - -
Lsi04g01986 1689 Gene3D Phosphorylase Kinase; domain 1 1429 1490 - -
Lsi04g01986 1689 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 396 450 - -
Lsi04g01986 1689 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1431 1647 - -
Lsi04g01986 1689 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 183 396 - -
Lsi04g01986 1689 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1431 1647 - -
Lsi04g01986 1689 ProSiteProfiles Protein kinase domain profile. 786 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01986 1689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1536 1548 IPR008271 GO:0004672|GO:0006468
Lsi04g01986 1689 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 491 1096 - -
Lsi04g01986 1689 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1159 1333 - -
Lsi04g01986 1689 Gene3D Ribonuclease Inhibitor 1127 1232 IPR032675 -
Lsi04g01986 1689 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 396 450 - -
Lsi04g01986 1689 SUPERFAMILY L domain-like 1128 1329 - -
Lsi04g01986 1689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 908 920 IPR008271 GO:0004672|GO:0006468
Lsi04g01986 1689 Gene3D Phosphorylase Kinase; domain 1 767 861 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00840 Lsi-Chr2:7864102 Lsi04g01986 Lsi-Chr4:26937585 1.49E-09 dispersed
Lsi04g01983 Lsi-Chr4:26885775 Lsi04g01986 Lsi-Chr4:26937585 2.89E-10 dispersed
Lsi04g01984 Lsi-Chr4:26913871 Lsi04g01986 Lsi-Chr4:26937585 1.05E-23 dispersed
Lsi04g01986 Lsi-Chr4:26937585 Lsi11g01653 Lsi-Chr11:24830084 2.71E-46 dispersed
Lsi04g01985 Lsi-Chr4:26916892 Lsi04g01986 Lsi-Chr4:26937585 1.50E-06 tandem
Lsi04g01986 Lsi-Chr4:26937585 Lsi04g01987 Lsi-Chr4:26970268 4.38E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83602 PF07714 PK_Tyr_Ser-Thr 9.40E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01986 - - csv:101221782 1622.06