Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01987 ATGATCGGAACTTGGGACATGGATTTGGCTGTTTGGAACTTTTTCAAGAGTGTTCGTGTTCTTGTTTTTGGGTTCCTGCTTTTGAACTGCTTCTTGGGATTTGAATCCCATGCCCAACCTCTGCCTGATCAAGAAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAATGTTCACCAAAATTCTTGCATTAATGGTGATGGATTTTTCAATAGACCTATCCTTGGTACTGATATTATCAGAGAGGTTAACTGCACTTGCTCCACCACTGTTTGCAGTGTCACTAGCATAGATCTTACTCGCAATTTAATTTCTGGATCAATCCCTAAAGAGTTTGCTCAGATTCCTCTTGTTGATTTGTCCATGTTGGGAAATCGTCTCAGTGGCCAAATTCCTCCAGAAATTGGTGACATTGCTACACTTGAGCATTTGGTTTTGGAAGACAATCTCCTTGGAGGGAATCTTCCCGAAAGCCTCGGGCGACTGAGCCGCTTGCAAAGATTACTTCTTTCTGCAAATAATTTCAATGGAACAATTCCAACATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGGATAGATGGAAATGATGTATCAGGAAGGCTTCCTGAATTTATTGGCAATTGGACCAAACTTGTGAGACTGGATATTCAAGGAACTTCTATGGAGACTCCTATTCCTAGTGGCATATCTGACTTGAAAAACTTAACCCAATTGAGGATCACTGATTTGAAGGGACTGCCAACAAGTTTTCCTAATTTGACTCAATTGACATCTTTAGAAGAACTGATCCTAAGAAATTGCTTAATCCGGGATCGGATTCCTGGGTATATTGGACTTTTTAGTAATTTGAAAACTTTAGATTTATCTTACAACAATTTTACAGGGTCCCCTGTTTCAAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAATGAAACTGTTGCTTGGTGCTTGAGAAAGGATCTCCCTTGCCCAATAGGAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGAATGGAGGTTGATGGTAATGAATATGAAGAGGATGTAACTCCAGGTGGCAAATCCAATTTCCTTTCTTTTTCTGATAGATGGGCTTATAGCAGTACTGGTGTTTTCCTGGGAGATGAGAATGCTAATTACAGAGAAACAAGTAGCAATGCATCTATTCCGAGCATCTACCGAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGCTTAAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTATACTGCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAGATTTGGTTCAAAAAGATTTTAACATAATGGAGAAAGCTGGTGGTGTTGGGAAGAGCTTTATTCTAGAAGAGCCTAATATTTTGGTGAATGGAAGTACTCTTGAGATTCACTTATATTGGGCTGGTAAAGGAACTACTGCCATTCCAGACAGAGGGGTCTATGGACCTTTGATATCGGGCATCACAGTCACACCAAACTTTGATGTGAACACTGGAGGGCTATCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTATTTTTGTGTTTGTTGTGTTGGTATTGGCTATTCTTAGATGGAAAGGTTATTTGGGTGGAAAGGACACTGAAGACAGTGGTAAGATTTCAAAAGAGGCAGGGCTAGAGAATGATTCAAATTCAAAATTGAAGGCTCTGGATTTACAGACAGGTTATTTCAGTTTGAGACAGATCAAAACAGCCACCAACAACTTCGACCCGACGTATAAGATAGGCGAGGGAGGTTTCGGTCCTGTCTACAAGGGTGTATTGTCGGATGGTACTTCGATCGCAGTAAAACAATTATCCTCTAAATCAAGACAAGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTCAAGCTTTATGGTTGCTGTATTGAAGGAAACCAGTTATTGCTTGTTTATGAGTATCTAGAGAACAATAGTCTTGCTCGTGCCCTTTTTGGTAAGTGTTTTAGATATATATGTCATTGCGCCGAGGAGCATCGACTACACCTGGATTGGCCGATAAGAATGAAGATATGCTTGGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCATAGAGATATAAAAGCTACCAATGTGTTACTTGATAAAAACTTGAATGCCAAGATTTCTGACTTTGGATTGGCTAGGCTTGATGAAGAGGAGAATACCCATATCAGCACAAGAATTGCTGGCACAATAGGTTACATGGCTCCTGAGTATGCAATGAGAGGCTACTTAACTGATAAAGCTGATGTTTATAGCTTCGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAAAGTAACACAAATTACAGGCCAAAAGAGGAATTTGTTTATCTTCTCGACTGGGCTTATGTTCTACAAGAGCAAGGAAACCTTCTCGAACTTGTTGATCCGAGTCTCGACTCACATTACTCAAAAGAAGAGGTGATGAGGATGATTCATATAGCTCTGTTATGCACAAATCCATCTCCAACTCTTAGGCCATCCATGTCTTCAGTGGTTAGCATGCTCGAAGGCAAAATTGCAGTCCAAGCGCCGATCATAAAGCGCGATGCAGCAGATCAAGAAGCGAGGTTCAAAGCGTTCGAAAGGCTATCACAAGATAGCATAACAAGCATTTCAACATCATCACAAGGCATTCCAATGCAAAAAAGCATGTTGATTGATGGGCCTTGGGTTGATTCCACTACTTCTACTCAAAACAAGGATGAAACTCAAGATTATTCTTCAACCAGAAACCTCCTTTAG 2916 40.43 MIGTWDMDLAVWNFFKSVRVLVFGFLLLNCFLGFESHAQPLPDQEVRALQAISAELRNLNWNVHQNSCINGDGFFNRPILGTDIIREVNCTCSTTVCSVTSIDLTRNLISGSIPKEFAQIPLVDLSMLGNRLSGQIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLQRLLLSANNFNGTIPTSYGNLKNLTDFRIDGNDVSGRLPEFIGNWTKLVRLDIQGTSMETPIPSGISDLKNLTQLRITDLKGLPTSFPNLTQLTSLEELILRNCLIRDRIPGYIGLFSNLKTLDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNETVAWCLRKDLPCPIGTRFHSLFINCGGQRMEVDGNEYEEDVTPGGKSNFLSFSDRWAYSSTGVFLGDENANYRETSSNASIPSIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTADQTFSSLGERIFDISIQGDLVQKDFNIMEKAGGVGKSFILEEPNILVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISGITVTPNFDVNTGGLSAGAIAGIVVGIFVFVVLVLAILRWKGYLGGKDTEDSGKISKEAGLENDSNSKLKALDLQTGYFSLRQIKTATNNFDPTYKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGKCFRYICHCAEEHRLHLDWPIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLDSHYSKEEVMRMIHIALLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIIKRDAADQEARFKAFERLSQDSITSISTSSQGIPMQKSMLIDGPWVDSTTSTQNKDETQDYSSTRNLL 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26970268 26981214 + Lsi04G019870.1 Lsi04g01987 662036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01987 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Lsi04g01987 971 PANTHER - 320 955 - -
Lsi04g01987 971 ProSiteProfiles Protein kinase domain profile. 613 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01987 971 Gene3D Transferase(Phosphotransferase) domain 1 692 915 - -
Lsi04g01987 971 Gene3D Ribonuclease Inhibitor 210 321 IPR032675 -
Lsi04g01987 971 Pfam Malectin domain 346 524 IPR021720 -
Lsi04g01987 971 Gene3D Ribonuclease Inhibitor 43 209 IPR032675 -
Lsi04g01987 971 MobiDBLite consensus disorder prediction 947 971 - -
Lsi04g01987 971 PANTHER - 100 280 - -
Lsi04g01987 971 SUPERFAMILY Protein kinase-like (PK-like) 597 898 IPR011009 -
Lsi04g01987 971 SMART serkin_6 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01987 971 Gene3D - 344 529 - -
Lsi04g01987 971 SUPERFAMILY L domain-like 85 307 - -
Lsi04g01987 971 CDD STKc_IRAK 619 895 - -
Lsi04g01987 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 100 280 - -
Lsi04g01987 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 320 955 - -
Lsi04g01987 971 Pfam Protein tyrosine and serine/threonine kinase 618 893 IPR001245 GO:0004672|GO:0006468
Lsi04g01987 971 Gene3D Phosphorylase Kinase; domain 1 574 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02204 Lsi-Chr3:33067216 Lsi04g01987 Lsi-Chr4:26970268 6.10E-108 dispersed
Lsi04g01987 Lsi-Chr4:26970268 Lsi07g00293 Lsi-Chr7:3155917 0 dispersed
Lsi04g01986 Lsi-Chr4:26937585 Lsi04g01987 Lsi-Chr4:26970268 4.38E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83603 PF07714 PK_Tyr_Ser-Thr 3.40E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01987 - - csv:101222014 1371.3