Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01989 ATGGATTTGAAGAATGTTGGTAATGTTGGTGTTCTGTTTTGGGGATTGCTGCTTATTTTCAACTGCTTTCTGGGATTTGGATCCTATGCCTATCCTTTACTACCCGAACAAGAAGTGAGAGCCCTTGAAGCAATATCTGGAGAGCTAAGTAACTTAAACTGGAAGGTTCACCAAAATTCTTGCATTGATGGCTATGGATCTTTCAATAGACCAATCCTTGGTACAGATATTATCAGAGAGGTTAATTGTAGTTGTAATACAAGTTTTTGCAACATCAACACCATTCGGCTGAAGGGTCTGAATCTAGTGGGAGTTCTACCTACAGCATTTGCAAATCTTACTGCATTGCAATATTTAGATCTCAGTCGCAATTTAATAAATGGATCGATCCCTAAGGAGTTTGGTCGCATTCCTCTTGTTACTTTTTTGATGGTTGGAAACCGGCTCAGTGGTCAGATTCCACAAGAAATTGGTGATATTGCTTCGCTTGAGGAATTGAACTTGGAAGAGAATATGCTTGAAGGAAATCTTCCTGAAAACCTTGGGAAACTCGGCAACTTGGGAAGACTGCTTCTTTCCTCCAACAATTTTACAGGGCGGATTCCAAAATCTTATGAGAACTTAAGCAACTTGACTGAATTTTGGATGGGAGGAAGTGATTTATCTGGAAAGCTACCTAAATTTATTGGTAACTGGACCAAACTTCGTAAACTTCGTATTCAAGGATCTTCCATGGAGAACCCCATTCCTCCTGCCATTTCCCACATGACAAACTTAACTGAACTTGATGGATGGTGCCTAAGGAAGGATCTGCCTTGCCCAAGAGAAGCTCGGTTTTATTCATTGTTCATAAATTGTGGAGGAGAAAGAATAGAGGTCGATGGTAATACATACGAAGGCGACGAGACTTTGGGTGGCGAATCCAAATTTTTTTTCATTTCAGAAAGATGGGGTTACAGCAGTAGTGGGGTTTTCTTGATAAATACGGCTGATCAAGGTCCTCCTTTTAAAGTTAAAAAAACTACCAATGCTTCTGCTTCTGCTTCTGCTTCTCCTTCTGTTTCAGGCATCTATGCCACAGCTCGACTTGCTCCTGTTTCCCTCAAATACTATGGATTTTGCTTGCGATCTGGAAGTTACAATGTCAAGCTTCACTTCGCTGAAATTATGTTTAATTCTGATCCCCTCAACTCTACCTCCCTCGGAAGGCGCGTTTTCGACATCTCAATTCAAGGAAGGTTAATTAGAAAAGATTTTAACATAATGGAGGAAGCTGGAGGAGTGGATAAGAGGTTTGTTCTGGAAGAGCCTAATATTAAAGTGAGTGATAGCACTCTTGAGATCCACTTATATTGGGCTGGTAAAGGAACTACTGCCATTCCACACAGAGGGGTATATGGACCTCTAATATCTGCAATTACAGTCACACCTAACTTTGACGTGGAAACTAGAGAGCTATCAGGAGGAGCCATTGCTGGCATCGTTGTTGCTACTTTTACATTCGTCGTGTCGGGCCTAAATTTAGAAACGAGTTATTTCAGTTTAAGACAAATAAAAGCAGCCACCAACAACTTTGACTTGGCACATAAGATAGGGGAAGGAGGTTTTGGTCCAGTCTACAAGGGAGTACTATTGGATGGTACTATAATTGCTGTAAAACAGCTATCCTCTAAATCAAGTCAAGGGAATCGTGAATTCCTCAATGAAATAGGAATGATATCAGCCTTAAAACATCCAAATCTTGTTAAGCTTTATGGGTCTGAGAAGCACTTATTACATTTGGATTGGCCAGTAAGAATGAAGATATGTTTGGGAATAGCAAGAGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCATAGAGATATAAAAGCTACAAATGTTCTACTTGATGGAAATTTGAATGCTAAGATCTCTGACTTTGGCTTGGCTAAGCTTGATGAAGAGGAGAAAACTCATATCAGCACAAGAATTGCAGGCACAATAGGTTACATGGCTCCTGAATATGCAACGAGAGGCTATTTGACCGATAAAGCCGACGTTTACAGCTTCGGAGTGGTTGCTTTAGAAATTGTTAGTGGAAAAAGCAACACAAATTACCGGCCAACTGAAAAGTTTTTTTTCCTTCTAGATTGGGCTTGTGTTCTACAAGATGAAGGAAACCTACTCGAACTTGTTGATCCAAAACTCGGGTCAAATTACTCAAAGGAAGAGGCAATGAAAATGCTTCACATAGCTCTATTATGTACAAATCTATCTCCAACTCTAAGACCATCCATGTCTTCAGTGGTTAGCATGCTTGAAGGCAAAATTAATGTCCAAACACCCAACATCAAGCAAGATGCAACAATTGATGATCATCAAATTGCAAGGATCAAAGCCTTTGAGTTATCACAAGATCATAGCATAAGAAGTACTATTGCAGCTTCGACATCGTCGCAAAGTATTAACGTGCTAACCGATGACGATACGTCATGGATAGATTCATCAGCTCATTCTATCCAAAATATGAATGCTACTCAATACTATTCTTCAGCTGGAAGTCTCCTCAAATATCAGTGA 2571 39.91 MDLKNVGNVGVLFWGLLLIFNCFLGFGSYAYPLLPEQEVRALEAISGELSNLNWKVHQNSCIDGYGSFNRPILGTDIIREVNCSCNTSFCNINTIRLKGLNLVGVLPTAFANLTALQYLDLSRNLINGSIPKEFGRIPLVTFLMVGNRLSGQIPQEIGDIASLEELNLEENMLEGNLPENLGKLGNLGRLLLSSNNFTGRIPKSYENLSNLTEFWMGGSDLSGKLPKFIGNWTKLRKLRIQGSSMENPIPPAISHMTNLTELDGWCLRKDLPCPREARFYSLFINCGGERIEVDGNTYEGDETLGGESKFFFISERWGYSSSGVFLINTADQGPPFKVKKTTNASASASASPSVSGIYATARLAPVSLKYYGFCLRSGSYNVKLHFAEIMFNSDPLNSTSLGRRVFDISIQGRLIRKDFNIMEEAGGVDKRFVLEEPNIKVSDSTLEIHLYWAGKGTTAIPHRGVYGPLISAITVTPNFDVETRELSGGAIAGIVVATFTFVVSGLNLETSYFSLRQIKAATNNFDLAHKIGEGGFGPVYKGVLLDGTIIAVKQLSSKSSQGNREFLNEIGMISALKHPNLVKLYGSEKHLLHLDWPVRMKICLGIARGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDEEEKTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYRPTEKFFFLLDWACVLQDEGNLLELVDPKLGSNYSKEEAMKMLHIALLCTNLSPTLRPSMSSVVSMLEGKINVQTPNIKQDATIDDHQIARIKAFELSQDHSIRSTIAASTSSQSINVLTDDDTSWIDSSAHSIQNMNATQYYSSAGSLLKYQ 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26990911 27009057 + Lsi04G019890.1 Lsi04g01989 662038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01989 856 Pfam Leucine rich repeat 91 143 IPR001611 GO:0005515
Lsi04g01989 856 Pfam Protein kinase domain 527 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01989 856 PANTHER - 70 262 - -
Lsi04g01989 856 Pfam Protein tyrosine and serine/threonine kinase 594 770 IPR001245 GO:0004672|GO:0006468
Lsi04g01989 856 Gene3D Phosphorylase Kinase; domain 1 511 587 - -
Lsi04g01989 856 Gene3D Transferase(Phosphotransferase) domain 1 588 777 - -
Lsi04g01989 856 CDD STKc_IRAK 531 772 - -
Lsi04g01989 856 PANTHER - 264 586 - -
Lsi04g01989 856 PANTHER - 591 820 - -
Lsi04g01989 856 SMART serkin_6 525 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01989 856 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
Lsi04g01989 856 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 262 - -
Lsi04g01989 856 SUPERFAMILY L domain-like 78 263 - -
Lsi04g01989 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Lsi04g01989 856 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 264 586 - -
Lsi04g01989 856 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 591 820 - -
Lsi04g01989 856 Pfam Malectin domain 281 473 IPR021720 -
Lsi04g01989 856 Gene3D Ribonuclease Inhibitor 194 273 IPR032675 -
Lsi04g01989 856 Gene3D - 280 510 - -
Lsi04g01989 856 SUPERFAMILY Protein kinase-like (PK-like) 508 771 IPR011009 -
Lsi04g01989 856 ProSiteProfiles Protein kinase domain profile. 525 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01989 Lsi-Chr4:26990911 Lsi07g00293 Lsi-Chr7:3155917 0 dispersed
Lsi04g01989 Lsi-Chr4:26990911 Lsi04g01991 Lsi-Chr4:27020878 0 proximal
Lsi04g01989 Lsi-Chr4:26990911 Lsi04g01990 Lsi-Chr4:27014043 2.78E-06 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83604 PF11721 Malectin 1.00E-39 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01989 - - csv:101222014 828.55