Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01991 ATGGTTCATTCATTGTTCATTAATTGTGGAGGAGGAAGTATGGAGTTTAATGGTAGTAGATATGAAGCAGATGATACTCAAGGTGGGAAAGCCAATTTCTTTATCTCATCACAAAGATGGGGTTACACTTCTACTGGTGTTTCCTTGCTAAATGATCACCTTCCTTTCAAACTATCATCTACCAATTCCTCTGCTTCTACTTCACCAACCCTCTATTCCACTGCTAGAGTTTCCCCTCTCTCTCTCAATTACTATGGATTTTGCTTGTTGAATGGAAGCTACAATGTCAAGCTTCACTTTGCTGAAATTTTGTTTACTGCTGACCAAACTTATAGCAGCCATGGGAGGCAGCCTAATGTTATAGTCAATGGAAGTAGTACTCTTGAGATCCACTTGTATTGGGCTGACTTCAAAGTGGAAACTAGAGGGCTACCGGCTGGAGCTATTGCTGGCATTGTTGTTGGTATTTTCGTCTTTGTCGTCCTAGTATTTGTTGTTCTTCGATGGAAGGGTTATTTAGGTGGAAAGGAAACCGAAGACGATGAACTTCGAGACTTGAAATTACAGACAGGTTATTTCAGTTTAAGACAAATCAAAGCAGCCACCAACAACTTTGACTCTGCACATAAGATTGGGGAGGGAGGCTTTGGTCCTGTCTACAAGGGACTCCTCTCAGATGGCACTTCAATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAATTCATCACAGAAATTGGGATGATTTCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTGTTGCTTATTTATGAGTATCTACAGAACAATAATCTTGCTCGTGCACTTTTTAGCCCTGAGAAGCATTCCTTGCATTTGGATTGGCCAATAAGAATGAAGATATGTTTGGGAATAGCAAAAGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAGCTACTAATGTTCTACTTGATGAAAACTTGAATGCCAAGATCTCTGACTTTGGGTTGGCTAAGCTTAGTGAAGAGGAGAACACTCATATTAGCACAAGAATTGCAGGCACAATTGGTTATATGGCTCCTGAATATGCAATGAGGGGTTATTTAACTGATAAAGCAGACGTATATAGCTTTGGAGTTGTAGCGTTAGAAATTGTTAGTGGAAAAAGTAATACGAGTTACATGCCAAAAGAGGAGTTTGTTTATCTTCTAGATTGGGCTTTTGTTCTACAAGAGGAAGGAAACTTACTTGAACTTGTTGATCCAAATCTTGGCTCACATTACTCAAAAGAGGAGGTCGTGAGGATGCTTCAAATAGCTCTCTTGTGCACAAACTTGTCTCCAAGTCTCAGACCATCCATGTCTTCTGTGGTTAGTATGCTTGAAGGTAAAATCGCAGTCGAAGTATCAAACATCAAGCGCAACACGACCAATCAAGATGCAAGGTTCAAAGCTTTTGATCAAAAGCTGTCACGAGATAGCCTAACAAGCATTTCAACCTCGACGCAATTGCAAGGCATTGAGATGCAAAAGAACATAGTAATGGATCGGTCATGGATTGACTCCTCATCTACTTCTACCCAAAACAAAGACGAGTATTCTTACAAGTCTCCTTACAGAGTCATTCAAATCAACTGA 1683 39.51 MVHSLFINCGGGSMEFNGSRYEADDTQGGKANFFISSQRWGYTSTGVSLLNDHLPFKLSSTNSSASTSPTLYSTARVSPLSLNYYGFCLLNGSYNVKLHFAEILFTADQTYSSHGRQPNVIVNGSSTLEIHLYWADFKVETRGLPAGAIAGIVVGIFVFVVLVFVVLRWKGYLGGKETEDDELRDLKLQTGYFSLRQIKAATNNFDSAHKIGEGGFGPVYKGLLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLQNNNLARALFSPEKHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDENLNAKISDFGLAKLSEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTSYMPKEEFVYLLDWAFVLQEEGNLLELVDPNLGSHYSKEEVVRMLQIALLCTNLSPSLRPSMSSVVSMLEGKIAVEVSNIKRNTTNQDARFKAFDQKLSRDSLTSISTSTQLQGIEMQKNIVMDRSWIDSSSTSTQNKDEYSYKSPYRVIQIN 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27020878 27024799 + Lsi04G019910.1 Lsi04g01991 662040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01991 560 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 172 516 - -
Lsi04g01991 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
Lsi04g01991 560 ProSiteProfiles Protein kinase domain profile. 205 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01991 560 SMART serkin_6 205 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01991 560 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 137 - -
Lsi04g01991 560 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 172 516 - -
Lsi04g01991 560 Gene3D - 3 139 - -
Lsi04g01991 560 Pfam Malectin domain 5 127 IPR021720 -
Lsi04g01991 560 CDD STKc_IRAK 211 478 - -
Lsi04g01991 560 Gene3D Transferase(Phosphotransferase) domain 1 281 504 - -
Lsi04g01991 560 Gene3D Phosphorylase Kinase; domain 1 174 280 - -
Lsi04g01991 560 Pfam Protein tyrosine and serine/threonine kinase 208 475 IPR001245 GO:0004672|GO:0006468
Lsi04g01991 560 SUPERFAMILY Protein kinase-like (PK-like) 189 482 IPR011009 -
Lsi04g01991 560 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01991 Lsi-Chr4:27020878 Lsi07g00293 Lsi-Chr7:3155917 0 dispersed
Lsi04g01989 Lsi-Chr4:26990911 Lsi04g01991 Lsi-Chr4:27020878 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83605 PF07714 PK_Tyr_Ser-Thr 3.30E-51 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01991 - - cmos:111446321 811.216