Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01992 ATGTCCGTAGAAAGATCCTTTGAAGCGTGGGAGGAGGTGCAGAGGCATGGTCAGGATTTGGCGGATCGTCTTGCTCAGGGTTTCACGGGACTCATTCATTCTCACATAGCGCCTCCTTCTTTTCCCTGGCCCAATCCTCCCCAGTCTAAGCTCTTTGATCTTGAATTTCCGGGCCAAAGTTTTGGTATCAAGGATTATGGGTTGACTGCCCATAATTCTGGAATTAATGGGGTTACATCCATTTTTGATATTGGTAATAGGATTGGACAAGCTGGCGCTGATTTTGGTGCTTGTTTGAATGGTATGGTACAACAATTTTTTAGACAGCTCCCAGTTCCGTTTCGGCAAGAGGAGAATGTGATCGCATCGGTTAGGATGGATCTGGATAAGAGTTGGCAGAGGGATGATATGGGAGTCGCTGTTCAAGGGAATCTTGGAACATTAACGGAGTGTTTGCGTAATTCTGAACTTGTTGACAAGGATGCTGTTTCAGATGGGGTGGTTGATGATGAAGCTTCTGGCTTTGATTTGAGAGCTATAGGACATCTGGGTAGGGCACAGGGCACGATCAATATTTCTTCAACGTATGATAGTAGATCACGAGATGTGGAAAGTTCATTAGTTGCTAGAGGAGATTTATGGAGAGTAGAGGCATCACATGGCAGAACAGCAACTGGAAATGATAATTCATCTTTATTTCTGCTGCAGCTTGGGCCAGTACTATTTGTTCGTGATTCAACACTTCTTTTGCCTGTGCATTTATCAAAGCAGCACTTGCTTTGGTACGGTTATGATAGGAAGTCTAGTAACATAATCTCTCCCCTCCCTCCCTCCCAGTCCTTTGTTGATTTGCAGTTCCCCAATGGGCAGTTGACTTATGTTTCGGGTGAAGGTTTAACTACAACGGCCTTTTTGCCTTTTTGTGGAGGCCTCCTTCAAGCTCAAGGCCAATGTCCAGGAGAAATGAGATTCAGCTTCTCTTGCAAGAATAAGTGGGGAACACGAATAACACCAATGGTGCAATTGCCTGATAAATCATTTACTTTGGACCTTGCTCAATCATTGGCTTGGAAGAGATCAGGTCTTCTGGTGAAACCAACTCTCCAATGCAGTGTGAGTCCCACTTTTGGTGGAAGCAATCCTGGGTTTCGTGCTGAAATTGTTCATTCAGTGAAGAAACATCTCAATCTCATGTGCGGCTGTTCTTTCATTGCCCACCCTTCTGCATTTGCTTCAATTTCTATTGGCAGGTCGAAGTGGAACGGAAACGTAGGGAATTCAGGGATAGTTGTAAGAGTTGATACTCCACTCTCAAATATTCGTAGAACTTCCTTCTCTGTTCAGATAAATACTGGGATTGAGTGTTGA 1368 44.3 MSVERSFEAWEEVQRHGQDLADRLAQGFTGLIHSHIAPPSFPWPNPPQSKLFDLEFPGQSFGIKDYGLTAHNSGINGVTSIFDIGNRIGQAGADFGACLNGMVQQFFRQLPVPFRQEENVIASVRMDLDKSWQRDDMGVAVQGNLGTLTECLRNSELVDKDAVSDGVVDDEASGFDLRAIGHLGRAQGTINISSTYDSRSRDVESSLVARGDLWRVEASHGRTATGNDNSSLFLLQLGPVLFVRDSTLLLPVHLSKQHLLWYGYDRKSSNIISPLPPSQSFVDLQFPNGQLTYVSGEGLTTTAFLPFCGGLLQAQGQCPGEMRFSFSCKNKWGTRITPMVQLPDKSFTLDLAQSLAWKRSGLLVKPTLQCSVSPTFGGSNPGFRAEIVHSVKKHLNLMCGCSFIAHPSAFASISIGRSKWNGNVGNSGIVVRVDTPLSNIRRTSFSVQINTGIEC 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27024989 27030096 - Lsi04G019920.1 Lsi04g01992 662041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01992 455 PANTHER OS01G0729900 PROTEIN 1 455 - -
Lsi04g01992 455 PANTHER OS01G0729900 PROTEIN 1 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01992 - - - cmo:103501831 864.759
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g77 Blo03g00705 Blo03g01564 . . . . . . . . Cma01g01258 Cma09g00825 Car01g01081 Car09g00595 Sed04g2477 Cpe06g00524 Cpe02g00657 Bhi09g03538 Tan01g4292 Cmetu07g2287 . Hepe01g1456 Mch11g0993 . Cla11g01694 Cam11g1761 . Cco11g1785 Clacu11g1920 Cmu11g1731 . Cone6ag0205 . . . Lsi04g01992 Csa04g02265 Chy07g00007 Cme07g00515 . . . . Bpe11g00440 . . Bma14g00273 . Cmo01g01315 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006396 1 1 1 2 1 0 2 1 0 1 1 1 2 1 1 1 0 1 2 1 1 1 1 1 1 1 1 3 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01992 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.058941
Lsi04g01992 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g01992 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g01992 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0