Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02010 ATGAATCCCTACTCCGAGAAAACACTCACCGAAGAGGTCCTGTATCTTCACTCTCTGTGGCGCCGAGGCCCGCCGAGGAACCCTAAACCCACTCACAACCATTCATCCACCGTCGTCGCCGCTGCCGAGAATCGGAACCCCTCCAACAAGAGACCCAGAGATCCAAAGAACCGAAAGAACAAGAAGAAAAAACCACGCTCCGAGCCACCGCAAGACTCCAGCCCTGAATGGCCCTGTCCGGAGCCGCTTCAAAATCAGCCCTCCACGTCATCTGGGTGGCCGTCAATTGAGCCCGTTGCCACTCCGGTGCCTCAGCCGGTGTCGTCTGAAGAGCGAGCAAATCTTGCGGCGTTGCAATTGCAGTACAAGGGTTCCGAGGCTTGCCGGGGATTTTTCGCTAGAAATGCCGATTCGGGGAGCGACGAAGAGGGGGAGGAAGAGGAGGAGGAAGCTGAGGGTAATGATGGGGAAATGATGGAAAGTGAAGAATATAAGTTCTTTTTGAAGCTGTTTGTGGAGAATGACGAACTTAGGGGTTATTACGAGAAGAATTCTGAAAGTGGGTTGTTTTGTTGCTTGGTTTGTGGTGGAATGGGGAAAAAGAAATCTGGGAAAAGGTTTAAGAACTGCATTGGGCTTGTTCAACATTCGATTTCGATATCGAGGACGAAGAAGAAGCGGGCTCATAGGGCTTTTGGGCAGGTTGTATGCAGGGTTTTTGGTTGGGATATTAATCGACTTCCGACGATTGTGTTGAAGGGCGAGCCGCTCGGTCGAGCATTAGCCGATTCTGGAGACTTGAAGGTTCTGCCAGAGGAAAATCATGTGGCTAAAGATCATGATTCTGGGGTTCAGAATGAAAATGTAGCTATTTCAAATGATGACATTAATAAGAAGAATGACGTGGTTTCTGTGGATGAGAAGGAACAGAAATTGGAGGAAGAAAAGACAGCTGAAGATCCTACTTGTAATGCTAAAGATTTGATTTCTGGAGAGAATGATGATGCTTGCAATGATAACGATGTCAATCTGCAAGCAGAAAATACAGATGATTCAATTCCAGGCATTGGAGAAAGCAATGCGGAAATGGATAAATTGCCTGTTCCGGAGTTGATTTTGAAAGCATGTAAAGAATTTTTTGCAGCCTTCTTAACATCTATGAGCGACGATGATGTTAGTGAAAACAACTTAATCAACGGGGATGGAGTTGAGGAATGCGAAGAGTACAAATTCTTTTTAAAGTTGTTCACCGAGAACGAAAGCTTGAGAAGATATTACGAGAACAACTATGATGATGGAGAATTTTTCTGTTTAGCTTGTGAAGGAGCAGGAAAGAAAATGTTAAAGAGTTTTAAGACATGTGGTCGCCTTCTCCAGCATTCAACTTCCCTAGGGAATTGCAAAATATGGAAAAAACCGGTTCAGAAGCCTCACATTGCTAAAATGTTGAAACTGAAAATGCTGGCTCATAGGGCATATGGTTTAGTTATATGTAAGGTTCTTGGTTGGGACATTGAAAAGTTTCCTGCAGTCGTGTTAAAAGGCGAAGCTCTTGGTCGTTCCTTAACAAAGTCAGACGTGTCGAAGGACGAATCTGTCGGCAATGCAGTTGATAATACAAAGGAAGCAGATGATCTTGTAAAAGAAAACTCTACAAAGATTAACAAAATGCAGGGCAAATCTGTTGGCAATGCAGTCATCGAAGAAGATGACAAGAACAAAGGTTAA 1728 44.56 MNPYSEKTLTEEVLYLHSLWRRGPPRNPKPTHNHSSTVVAAAENRNPSNKRPRDPKNRKNKKKKPRSEPPQDSSPEWPCPEPLQNQPSTSSGWPSIEPVATPVPQPVSSEERANLAALQLQYKGSEACRGFFARNADSGSDEEGEEEEEEAEGNDGEMMESEEYKFFLKLFVENDELRGYYEKNSESGLFCCLVCGGMGKKKSGKRFKNCIGLVQHSISISRTKKKRAHRAFGQVVCRVFGWDINRLPTIVLKGEPLGRALADSGDLKVLPEENHVAKDHDSGVQNENVAISNDDINKKNDVVSVDEKEQKLEEEKTAEDPTCNAKDLISGENDDACNDNDVNLQAENTDDSIPGIGESNAEMDKLPVPELILKACKEFFAAFLTSMSDDDVSENNLINGDGVEECEEYKFFLKLFTENESLRRYYENNYDDGEFFCLACEGAGKKMLKSFKTCGRLLQHSTSLGNCKIWKKPVQKPHIAKMLKLKMLAHRAYGLVICKVLGWDIEKFPAVVLKGEALGRSLTKSDVSKDESVGNAVDNTKEADDLVKENSTKINKMQGKSVGNAVIEEDDKNKG 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27198560 27201362 - Lsi04G020100.1 Lsi04g02010 662059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02010 575 MobiDBLite consensus disorder prediction 140 157 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 308 322 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 529 575 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 21 110 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 29 44 - -
Lsi04g02010 575 PANTHER OS06G0153600 PROTEIN 372 571 - -
Lsi04g02010 575 PANTHER OS06G0153600 PROTEIN 1 348 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 535 551 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 308 339 - -
Lsi04g02010 575 MobiDBLite consensus disorder prediction 134 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02010 - - - bhj:120086655 894.034
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g108 . . . . . Bpe08g00983 . . . . . Cma09g00823 . Car09g00741 . . . Bhi09g03516 . . . . . . Cla11g01708 Cam11g1776 Cec11g1797 Cco11g1802 Clacu11g1935 Cmu11g1746 Cre11g2154 Cone6ag0196 . . . Lsi04g02010 Csa04g02283 Chy07g00020 Cme07g00534 . . . . . . Bma07g01166 . . . Cmo09g00818 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008090 1 5 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02010 Lsi_Chr04 FPKM 29.590816 31.385509 33.656876 32.066597 24.99674 25.507341 27.397778 31.579124 30.449812 29.911995