Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02011 ATGTCTCCATCTTCTGTAAAAATTGTCGCCGAGTATGCCAAGTCCAATCGCTCTACATGCAAGAATTGCTCCAAAACCATTCCTGCAAAAACACTCAGGTTGGGTTTTGTCACCAGAGATGGCCGGGGATTCGACATGACCCGCTGGTTTCATTCTGATTGCGCTTCTTTCGGTTCCGACCCTGTTTCTTCCGCCGAGGAGATTAATGGGTTCGCACTCTTGGAGGCATGTTTGAATACAAAACCTTATAATAGTTTATGTTCGTCCAGTGAAAGGGATAGTTTTTTTACTGAGTCACCACACGGTAGTGATCAGGAAGCTCTGAAGCAATTGGTTTGCAGAAGCCATGAATCTAAGGGCTGCAAAAGGGATGAGGATGAAGAAGATAGAGTTGAAGAAAGAGATCAAAAGAAAGTCAAGGTATGCATCCAGAAACCGACGCCCTTTGCAGAGCGTTTTCAGCATTTTCAAGTTATATTGGTCAATTCTATTGTTGATACATTGTCTACCTCTAGTTTGCAGCCAAAGTTAGATCTCGTCCTTACAGCTTCCAACATAAAGACCAAGTATAAGGATGCCACACTTTTACCTAAATGGAAGGCATTCCAGACGCTCATCTTTCTTGAGGAGGATGATGGGCTACATCATTCAAGTAAAATAGCTGCATTTGATTTTGATGGCTGTTTGGCAAACACATCTGTTAAAAGGTATGGCATAGTAGGTGCAGAGGCGTGGTCTCTGATGTATCCTTCAATACCACAAAAATTTCAGAGCTTGTACGATGATGGCTACAAGCTGGTAATATTTACGAATGAATCCAACATTGAGAGATGGAAGAACAAGAGACAGGTTGCTGTGGACTCCAAACTTGGGCGTCTCAATAATTTTATCAGTCAAGTCAATGTCCCAGTTCAGGTGTTTGTTGCCTGTGGAATAGGAAGCGGATTGGGTAAATCCGAAGAAGACCCGTATAGGAAACCGAAACCTGGGATGTGGCATATCATGGAGAACCACTTCAATGGCGGCATCCCCGTTAATATAGACCAATGTTTCTATGTGGGGGATGCAGCTGGGAGAGCCAAGGATCACAGTGATGCTGATCTCAAGTTTGCTCAGGCCATTGGGTTGAAGTTTTATGTTCCTGAAGAATTCTTTGTTGAGTAA 1164 43.3 MSPSSVKIVAEYAKSNRSTCKNCSKTIPAKTLRLGFVTRDGRGFDMTRWFHSDCASFGSDPVSSAEEINGFALLEACLNTKPYNSLCSSSERDSFFTESPHGSDQEALKQLVCRSHESKGCKRDEDEEDRVEERDQKKVKVCIQKPTPFAERFQHFQVILVNSIVDTLSTSSLQPKLDLVLTASNIKTKYKDATLLPKWKAFQTLIFLEEDDGLHHSSKIAAFDFDGCLANTSVKRYGIVGAEAWSLMYPSIPQKFQSLYDDGYKLVIFTNESNIERWKNKRQVAVDSKLGRLNNFISQVNVPVQVFVACGIGSGLGKSEEDPYRKPKPGMWHIMENHFNGGIPVNIDQCFYVGDAAGRAKDHSDADLKFAQAIGLKFYVPEEFFVE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27202963 27207148 + Lsi04G020110.1 Lsi04g02011 662060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02011 387 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 76 - -
Lsi04g02011 387 Gene3D - 2 82 IPR036957 GO:0003677|GO:0008270
Lsi04g02011 387 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 11 59 IPR001510 GO:0003677|GO:0008270
Lsi04g02011 387 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 2 386 - -
Lsi04g02011 387 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 219 378 IPR006549 -
Lsi04g02011 387 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 8 75 IPR001510 GO:0003677|GO:0008270
Lsi04g02011 387 SUPERFAMILY HAD-like 204 385 IPR036412 -
Lsi04g02011 387 TIGRFAM DNA-3'-Pase: DNA 3'-phosphatase 207 385 IPR006551 -
Lsi04g02011 387 SMART zf_PARP_3 11 79 IPR001510 GO:0003677|GO:0008270
Lsi04g02011 387 Pfam Polynucleotide kinase 3 phosphatase 219 385 IPR013954 -
Lsi04g02011 387 CDD HAD_PNP 219 385 - -
Lsi04g02011 387 Gene3D - 197 387 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02011 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] - csv:101207352 577.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02011 Lsi_Chr04 FPKM 15.479897 15.780823 14.788061 15.75292 16.478308 14.849513 16.98888 7.161048 8.273993 7.966144