Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02012 ATGGCCACTCCCTTGCAATTCCCTTTCTCTAAAACCCTAAACCCTTCATCTCCATTTCTCCACTCGACCTCCTTCTCACCATTTTCCAATCCTCTTCTTCAAACCATAACCCTAACCCTAAAATCCCATCAAACTCATAAACCCCTTTCCATTGTTTCCGGTCACCCAAATCCTTCCCTTCTTTCGATCTCCCGCCAAATTTCGCATTTCTCATTCGCAAACGCCCGTCGGGACATTCGTACACACGCCGGCCGGAGCAAGAAGAAGGGTGGAGGGCCCTCTCCCGGTAGGATAGAAGGCAACGCCGAGTTCCGACGGAAATTGAGGCATAATGCCCGCCGGAAAAGCCAGAAGCTCGCCGAGTCCCATTTCTACCGCCGCAAGAAGTCGAACAGCAATTACGCGGATAACTTCAGTGAGGATGAGCTTCAGCAGATCGGCCTCGGCTACGATCGGATGGTCCGATTCATGGAGAAAGACGACCCGAACTTACGCCATCCCTACGACTGGTACAAGTACGGCGAGTTCGGCCCGTACTCGTGGCGTGGAGTCGTCGTCGGCGAGCCTATTCGTGGGCGGTTCACGGATGAGCGAGTTACGATTATCAGCGAGGTTAAGGATCATGAGGAGTGGGAGAAGATCGAGCAATCAGAAATGGCTTCTGATTTCAGCGAAGGATTGCAGCGGATGGACAAGAGCAAAGGGCTTCGGTATTTTTGGGTGTTCGTGAGACACCCGCGGTGGAGGATTTCGGAGCTTCCATGGCAGCAGTGGACTTTGATTGCAGAGGTTGTAGTTGAAGCTGGTAAAGAAAGGTTAGATAAATGGAGCTTAATGGGTCGACTTGGAAATAAGTCAAGAAAAAATATAACTCAATGTGCAGCTTGGATGAGACCTGATATCATATATGTGAAAAAGCCTGTTTACCAATGCAGATTTGAGCCTCAGGATGAGTTTTTCCAGGCAATAATGCCATTTCTTGATCCCAAAACAGAGCAAGATTTTCTGTTTGAGTTGCAGGATGATGAAGGAGATATTGAATGGGTGACTTATTTTGGTGGGTTGTGTAAGATTGTGAGGATAAATCCAAAGGCATTTGTGGATGATGTGGTGAATGCTTATGAGAAGCTAAGTGATGAGAAGAAATCCAAGTGTTTGGAGTTTCTTTTGACTAACCACCCTGTGCCATTGCTGCATCCATATACAAAAGAGTGGAAGGCTAAGTTGGAGGAAGAGGAGTTGGGTTGTGATGCCCCGGACGACATCGAGAATCGAGGTGGTGAGGAAAATGTGATCACGGAGTGGATTGAGACTGATGATGACAATGAAGAAGAGTATGAGGATCAGCCTGAGGAGGATGTCGTAATGGAGACCGAGAACGAGGACGAGGATGAGGATGATAAACGAGAGGATGGAAATGAGGAAGAAGATGAGAATTATTGGGATGAAAGGTTCAGGAAGGCAATAAGTAGTCCAGAAGAACTGGAGAAGCTGTTTAAACGCAGTGCAGAAGTGACTGATGAATTTTATGAGAAGGAGAAGGAGAAGGAGAAAGTGGGAAGTAGAAGGGCCACAGCCATGGAAGATGGGGATGAAACAGAAATGAGAGGGAAGAGAGCAAAAGTGAGACCAGAAGAATGGGAGTATATTGGGTATGGGCCATGGAGGAAGAAGATAAAGAAAAGTCAGATTCCTCCAGAGCTGTTTTTGAGATCTACAGTAAGGCCATTCACTTACAGAAACCTTGTGAAGGAAATTGTATTGACAAGGCATGCTATTTTGGATGGTGAAATTGGGGTATGA 1803 46.87 MATPLQFPFSKTLNPSSPFLHSTSFSPFSNPLLQTITLTLKSHQTHKPLSIVSGHPNPSLLSISRQISHFSFANARRDIRTHAGRSKKKGGGPSPGRIEGNAEFRRKLRHNARRKSQKLAESHFYRRKKSNSNYADNFSEDELQQIGLGYDRMVRFMEKDDPNLRHPYDWYKYGEFGPYSWRGVVVGEPIRGRFTDERVTIISEVKDHEEWEKIEQSEMASDFSEGLQRMDKSKGLRYFWVFVRHPRWRISELPWQQWTLIAEVVVEAGKERLDKWSLMGRLGNKSRKNITQCAAWMRPDIIYVKKPVYQCRFEPQDEFFQAIMPFLDPKTEQDFLFELQDDEGDIEWVTYFGGLCKIVRINPKAFVDDVVNAYEKLSDEKKSKCLEFLLTNHPVPLLHPYTKEWKAKLEEEELGCDAPDDIENRGGEENVITEWIETDDDNEEEYEDQPEEDVVMETENEDEDEDDKREDGNEEEDENYWDERFRKAISSPEELEKLFKRSAEVTDEFYEKEKEKEKVGSRRATAMEDGDETEMRGKRAKVRPEEWEYIGYGPWRKKIKKSQIPPELFLRSTVRPFTYRNLVKEIVLTRHAILDGEIGV 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27208594 27210396 - Lsi04G020120.1 Lsi04g02012 662061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02012 600 MobiDBLite consensus disorder prediction 512 540 - -
Lsi04g02012 600 MobiDBLite consensus disorder prediction 433 478 - -
Lsi04g02012 600 MobiDBLite consensus disorder prediction 417 432 - -
Lsi04g02012 600 PANTHER OSJNBA0067K08.20 PROTEIN 5 599 - -
Lsi04g02012 600 MobiDBLite consensus disorder prediction 79 101 - -
Lsi04g02012 600 MobiDBLite consensus disorder prediction 417 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02012 - - - bhj:120086270 1030.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g110 . . . . . Bpe08g00981 . . . . . Cma09g00821 . Car09g00738 Sed04g2435 . . Bhi09g03512 Tan01g4318 Cmetu07g0546 . Hepe01g1441 Mch11g1010 . Cla11g01710 Cam11g1778 Cec11g1799 Cco11g1804 Clacu11g1937 Cmu11g1748 Cre11g2156 . Cone9ag0225 . . Lsi04g02012 Csa04g02286 Chy07g00023 Cme07g00536 . . . . . . Bma07g01140 . . . Cmo09g00816 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011575 1 1 0 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02012 Lsi_Chr04 FPKM 10.122968 8.281742 13.302709 13.781285 32.334106 30.252182 34.163185 1.284308 1.349435 1.511397