Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02013 ATGGCGAGACGAACCTTCACGACGGAGTTAGGCTGCATAGCTTGCGAGGAGCTTGCCGATTTTGGCGCTGGAAAGGAAGGCTGGCTCGTCGACAACCCCAATCTTCTATGCGCCCTCGATTCCCACTCTCTGGCGCTGGCCAATCGATCCATCATTCTTGTTCTTGGTTGGACCGGTTCCGATGGATATCAGGTGAAGATCAGGCCTTCTGATTTGTCTCCGATCGAAGCGGAGTACATCTCCGCTTTAGAATGGTTGGTGTTCGATGAAATTAAGGTGATTTTGGTCGGGACTTCTTGTGGGTATTTGCTGATTTACTCCTTGAGTGGGGATTTGATTCTCAAACAGATGATCCATCCTGGCAGAATTCTAAAGATTAGGGTCCATGGTCCGAAGAGAGATTTATCCCATGGATCTTCTTTCGAGGAGGTTTCAGTTGCTATGCCAGGTGTAATTGCTCGAATTGAAGGATCTGATATTCAGAATAAATTGCAAAAATGGTTTCAAGAATCAAATGCACGGTTTTGGGATCCAGAATCAGACCGGCAAGATATGGAGGATTCTGAAAATTCTTTTGAAAAGTTAGTTTATCAAGTATGGAACGTCAGCAAATACGGTTCCTGTGCAGATGCAGCAATCACCGGTGTTATGCCTCCTCCATTGATGGAACTTCAGCTGCTTTTATTGTTGGGCAGTCAAGTGAACGTTATTTTTGTGCAGTCACTGTTGGAGAGGATGCTGTTATTTCAGCATTCAGGTCAGGAACTTCTTGGCATCATGATTGCTGCAGCCTCTCCTTTGACGTGCTTGAAGGACCATCCAAGAAAGGGTGAGAAACTGACTTTGTCTCCAAGCGGTACATTGGCAGCTATTACAGATTCACTGGGTCGAATACTGCTTCTGGACACGCAGGCACTTGTGGTGGTGCGACTATGGAAGGGATATCGTGATGCCAACTGTTTGTTCATGGAGATGCTAGTTAATAGAGATGCTGCATCATCAAGTTCTAATTCCATAGATTATGAACCAGCAAAACATGATTACTGCTTGTGTTTGGCTATTCATGCACCAAAAAAGGGGATAGTTGAGATATGGCAGATGAGAACGGGGCGTCGCCTCCGAACCATTCAATGTACAAAAGGTAGCAAACTACTGCAACCTTCCTCCAGGTTTGGAGCGTCCATGGCTTCCCCTTATGTTCCATTGGAAGTTTTCTTAGTAAACGGAGATTCTGGTCAGATTTCTGTTATAAACCGAACCCTTTGA 1266 45.34 MARRTFTTELGCIACEELADFGAGKEGWLVDNPNLLCALDSHSLALANRSIILVLGWTGSDGYQVKIRPSDLSPIEAEYISALEWLVFDEIKVILVGTSCGYLLIYSLSGDLILKQMIHPGRILKIRVHGPKRDLSHGSSFEEVSVAMPGVIARIEGSDIQNKLQKWFQESNARFWDPESDRQDMEDSENSFEKLVYQVWNVSKYGSCADAAITGVMPPPLMELQLLLLLGSQVNVIFVQSLLERMLLFQHSGQELLGIMIAAASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEMLVNRDAASSSSNSIDYEPAKHDYCLCLAIHAPKKGIVEIWQMRTGRRLRTIQCTKGSKLLQPSSRFGASMASPYVPLEVFLVNGDSGQISVINRTL 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27211687 27216515 + Lsi04G020130.1 Lsi04g02013 662062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02013 421 Pfam Rab3 GTPase-activating protein regulatory subunit N-terminus 262 385 IPR032839 -
Lsi04g02013 421 Pfam Rab3 GTPase-activating protein regulatory subunit N-terminus 28 224 IPR032839 -
Lsi04g02013 421 PANTHER RAB3-GAP REGULATORY DOMAIN 1 225 IPR026059 GO:0043087
Lsi04g02013 421 PANTHER RAB3-GAP REGULATORY DOMAIN 263 417 IPR026059 GO:0043087
Lsi04g02013 421 SUPERFAMILY WD40 repeat-like 80 381 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02013 K19937 RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit - csv:101207844 670.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g111 . . . . . Bpe08g00980 . . . . Cma01g01248 Cma09g00820 Car01g01070 Car09g00737 Sed04g2436 . Cpe02g00668 Bhi09g03511 Tan01g4320 Cmetu07g0744 . Hepe01g1440 . . Cla11g01711 Cam11g1779 Cec11g1800 Cco11g1805 Clacu11g1938 Cmu11g1749 Cre11g2157 . . . . Lsi04g02013 . . Cme07g00537 . . . . . . Bma07g01139 . . Cmo01g01304 Cmo09g00815 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007413 1 1 1 1 1 0 2 0 0 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02013 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0