Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02020 ATGTCTCATTCTGGGAATCCCATTTCCGACCTTCGCTTTGATCATCTTTCCGATCGGTTTCGTGATTCTGTGAGTTGTGAAGTAAACAAACCCGACTTTCGTGAGTTAGATCTGGGTTCCCCTGTTTCTCCATTGCGCACTCGCCATCAGACTGGCGGCGGCCCCGCTGCGAGTAGTAGTTCCAGCTCCTCTGGATCGGCTTCTGGCCGGAATGGACCCAACCCAGTTGCTAAAAGATCCGATTCGGGTCCTAATAATCACTCTGGTGAACTCTCTGGGTCTAGCGAGAGCAGCCCAACCGCCGCGGAGAGCCTCCGATCCATCGGAACCCCTAAGAATTTCAAGTCGGGTCATAATAGATCCGATTCCGCCTCTAATCATCCATTAATCTATTCGGGTCAGTCTCAAAGCTCCGTTACTTCTCCCTCCAATGTGCTTCCCACTGGCAATATTTGCCCTTCAGGAAGGATCTTGAAGACGAGCATGCCGTCAACGAATCGGAGCTCGAGGACTGACGTTTTGGGTTCTGGGTCGGGAAATTACGGCCATGGGAGCATAATGCGGGGCCTCGGCGGTGTCAAAACCGGCGCTGTTGAATCGGTTAGCAATGCCAGTTCGAGGGCCGGTGGTGGTGGTGGAGACTCGTTAAAGAGGGCGAAACAGAGTGGGGATCCGGAGGAGTTAAAGAGAGCTGGAAATGAGCAGTACAAAAAGGGGCATTTCGCCGAGGCTTTGAGTCTTTATGATCGAGCCATTGCAATTTCTCCGGCCAATGCAGCTTACCGGGGCAACCGAGCGGCTGCCTTGACTGGTCTCGGGCGGCTCGGGGAGGCGGTAAGCGAGTGCGAGGAGGCGGTGAGATTGGATCCCAATTATATTCGGGCTCATCAGCGTTTGGCATCTCTGTTTCGTAGGTTAGGACAGGTGGAGAATGCTAGGAAACACCTTTGTTTTCCGGGTGTTCAGCCGGATCCAAATGAGCTGCAGAGATTGCAGCTGTTTATGAGTAGAGTGGAAGCTTTTTTAAAGCTTCATCAGATTGAAGATGCTGAATCTAGCTTATTTAGCATTCCGAAGTTACATCCATCGACCAACTCATGCTTACAAACGAAGTTTTTTGGAATGCTTTCAGAAGCATACTCTCACTTCATTCATGCCCAAATTGAGATGGCGTTGGGAAGGTTTGAGAATGCAGTTACGGCTGCTGAGAAAGCTGGGCAGATTGATGCTCGGAATGTAGAAGTGGCAGTGCTGCTTAATAATGTGCGCTTGGTTGCTAGAGCTCGTACCCGGGGCAACGATCTTTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCTTATGGGGAAGGTCTTAAGCTCGACCCTTCGAACTCAGTTCTCTACTGCAATAGAGCAGCCTGTTGGTTTAAACTTGGGATGTGGGACCGGTCCATCGAAGACTGTAATCAAGCATTACTTATCCAACCAACTTACGCAAAAGCCCTCCTTCGAAGGGCTGCCTCAAATAGTAAGCTTGAAAAGTGGGAGGAGGCTGTTAGAGATTATGAGGTTCTGAGGAGGGTGCTTCCAGATGACAATGAAGTTGCTGAGTCTCTATTTCATGCCCAAGTTGCATTAAAGAAATCTCGAGGGGAAGAAGTTCATAATCTGAAATTTGGTGGCGAAGTTGAGGAAGTGTCGAGCCTAGATCAGTTCAGAGCTGCCATATCGTTCCCAGGCGTCACTGTGGTTCATTTCAAAGCAGCATCTGATTTACAATGCAAGCAAATATCGCCATTCGTGGATATTCTTTGTCGTCGTTACCCTTCCATTAATTTCCTCAAGGTGAATCTGGAAGAAAGTCCAGCAATTGCAGATACAGAAAACGTAAGGATTGTACCGACATTCAAGATTTACAAAAGCGGCAATCGAGTGAAAGAGATCATATCTCCGACTCGCGAAATGTTGGAGCACTCGGTGAGGTATTATAGCTTATAG 1980 48.69 MSHSGNPISDLRFDHLSDRFRDSVSCEVNKPDFRELDLGSPVSPLRTRHQTGGGPAASSSSSSSGSASGRNGPNPVAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPKNFKSGHNRSDSASNHPLIYSGQSQSSVTSPSNVLPTGNICPSGRILKTSMPSTNRSSRTDVLGSGSGNYGHGSIMRGLGGVKTGAVESVSNASSRAGGGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYRGNRAAALTGLGRLGEAVSECEEAVRLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQPDPNELQRLQLFMSRVEAFLKLHQIEDAESSLFSIPKLHPSTNSCLQTKFFGMLSEAYSHFIHAQIEMALGRFENAVTAAEKAGQIDARNVEVAVLLNNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGMWDRSIEDCNQALLIQPTYAKALLRRAASNSKLEKWEEAVRDYEVLRRVLPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSSLDQFRAAISFPGVTVVHFKAASDLQCKQISPFVDILCRRYPSINFLKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTREMLEHSVRYYSL 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27268432 27272475 - Lsi04G020200.1 Lsi04g02020 662069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02020 659 Gene3D Tetratricopeptide repeat domain 321 543 IPR011990 GO:0005515
Lsi04g02020 659 SUPERFAMILY Thioredoxin-like 462 652 IPR036249 -
Lsi04g02020 659 MobiDBLite consensus disorder prediction 44 178 - -
Lsi04g02020 659 CDD TRX_family 564 643 - -
Lsi04g02020 659 Gene3D Tetratricopeptide repeat domain 217 317 IPR011990 GO:0005515
Lsi04g02020 659 Gene3D Glutaredoxin 544 656 - -
Lsi04g02020 659 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 14 333 - -
Lsi04g02020 659 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 332 657 - -
Lsi04g02020 659 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 333 IPR044534 -
Lsi04g02020 659 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 332 657 IPR044534 -
Lsi04g02020 659 MobiDBLite consensus disorder prediction 26 180 - -
Lsi04g02020 659 SUPERFAMILY TPR-like 224 414 IPR011990 GO:0005515
Lsi04g02020 659 MobiDBLite consensus disorder prediction 219 235 - -
Lsi04g02020 659 Pfam Tetratricopeptide repeat 231 292 - -
Lsi04g02020 659 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Lsi04g02020 659 SMART tpr_5 459 492 IPR019734 GO:0005515
Lsi04g02020 659 SMART tpr_5 425 458 IPR019734 GO:0005515
Lsi04g02020 659 SMART tpr_5 225 258 IPR019734 GO:0005515
Lsi04g02020 659 SMART tpr_5 493 526 IPR019734 GO:0005515
Lsi04g02020 659 SMART tpr_5 259 292 IPR019734 GO:0005515
Lsi04g02020 659 SMART tpr_5 379 412 IPR019734 GO:0005515
Lsi04g02020 659 Pfam Thioredoxin 564 647 IPR013766 -
Lsi04g02020 659 MobiDBLite consensus disorder prediction 201 235 - -
Lsi04g02020 659 Pfam Tetratricopeptide repeat 461 492 IPR001440 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02020 - - - csv:101208569 1199.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02020 Lsi-Chr4:27268432 Lsi11g01694 Lsi-Chr11:25121995 0 dispersed
Lsi06g00759 Lsi-Chr6:14276575 Lsi04g02020 Lsi-Chr4:27268432 1.14E-09 dispersed
Lsi11g00708 Lsi-Chr11:7533205 Lsi04g02020 Lsi-Chr4:27268432 6.45E-07 dispersed
Lsi04g02020 Lsi-Chr4:27268432 Lsi11g01649 Lsi-Chr11:24801333 8.44E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02020 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0