Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02022 ATGGATTTCCAGGATGATGGCTTTGAGGGATCTGCAAACGAGGACATTATTTTTAAGGAGGTTTTCTTTGGTAACAGCTCTAGCCATTCCAATAAGAGGTGTCCTCACAAGGCATTTAGTTATGAACGTGGGCCCTGTAAAATTAATGAGGCATCTTTATGTTCAAGTAGTGAACTCTCAACAGTGTCCAGTTATTCATACTCTAGAAATATAAAGCTTGATGAATGTTACAATGCTACGGAGAATATTAGGACCAGTTCTGCACCTAATAGTCTTCCATGCAAATGGACTTCAGTGGAAGGCGACAATGTGAATGCAAGTGCCAAGCGAATAAAACTGTCAACTGATGAAGCCTCTGATTCTGTACCCAATCTAGTTAAGGTTATGGAATCATCAGATAGTATAAGAGAACCTGTTTCCACTAATTGCTGTCCTGCTGAGGACTGTGATTCTGAATCATTTACATTCCACATTGTAGAATCGTCTAGACAGGGAATTATATCAAGTTGCTATCTGCTTAAGCACTTTGTAGAAAGGGACAGTAATCTGGGTGATCCCGATGCCTCAAAACGAACATCACTGAATTTAGAAGGTAATGATGAACCCAATATGGTGAATAAAGTTAGTGCTTCACCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTAGCAAGTCCTGATACACTCAACGAGAAGTTTGGATCTGCACTACATCTGGATGTAGGACAAATGAAATTTCTATGTCCAGAACTTGATACTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTATCATGTTGTTCACCTGTTTATTGCAGCTGGATGGTCTATTGAAAGGGTCAAAAGACCTTGCAGGCGTTATATGGAAACGATGTACAGATCACCCCAGGGAAGAGCCATTCGTGAATTTTCCAAGGCTTGGAGGGTTTGTGGTGAACTTCTAGTTGCTGATAAATGTAGTTTTGCAAAGAAAGTTGACAGCCGAGAATGGACTGGCATTCATAAATTCTTATTTGATCTTTCTGACACATTGTTACAGGTTGGGAAGGAAATGAATCAATTAGGGGCTACACCTTCATTGGCTCATTGCTGGGCTATTCTAGATCCCTATGTGGTGGTTGTGTTCATTGACAGAAAGATCGGTACCCTTAGGAAAGGAGATTTAGTTAGAGCTGCCTGTAGTATTGGGGTTAATGGGAGCAATAAGACCGATACTTTTGTGACATTAACAAATGAAGACAGTAGTATTTGTAACCTATATGCTGACAAAAATGCGTCTCCAACACATGATAATTCACCATCTGCCAAGAGTGCATTGACAGAGGGTGCATTGAAAGATCTCGATGGGGGCAATTGTGCTTTTGATGAGCAAATCTGTGATACAAGTTTCTCCAATTACTATGGGCATACAGAAGATGGAACAATGAAATTTCCGACAAAGGTGTCTTACGACCCCAATTTGGAGAACGGTCTGAATTGCATGGGCAGTCATTGTGATGAACCTGGGAACAAGATAGACACTGAGGATTTAGCTTCATTACCTGCTTATTTTTCAGGTTCAACCTGCAAATCTAGATGTCTGGCCGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCTTTACATCTCCTGATGAGGATAGCACTTTGTATTGTTCGGATGAACAGAGCTCTGAAAATCATGTTGAAAAGCCTAATGAAATGGTGAAAAATGCCCAAACGTGTTCCCTAGTAGAAGAAAAAAAAGTGGAAGTCCCACTTGATGATAAGGTGGAAAATAATTTGGAAGAATCTCTGAATGACTGTCCAAACTATACAAGTGACGATTTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATCAAGAAGGTGGGCTGCACTTTTCAGCTTCAATGTTCAAAACAGAGAATAAAGTTTCTGCCATACATTCTATTTTGAAGAAGAAAGGGCGTCGAAAGTGTAAAAAGATATCTGAAATTAAACCTACCTTGGCACCTCAGATTGATATTGTGAATGTGACTCCTGGAAAGAAAACTGAGTTGTGGGATATTGATGGGAATTGCTCTCAGTTTGATATGATAGAAGACCAGAAGTCCCATATAGCTGATACTAAAAATGTGGACAGTCACGAGAAGTGCTTGTCTCTCAGTCCTATTTCATGCCATTCTGAGAGGAAGGGTTCAAAGTTCAAAAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAGAAATTAAATGAATGTCAAATTGAAGATGATGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAGGTGATGCTGGATTTTCCCATGTAAGAAAATACTTAAAATCTAGAGCAAAAATGAACCGCAAAAGACAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCATAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGATATAATCCAATACCAAAGCCCTAAGGATGATAGTGTAGTTAAATATGGTAGAATCACTGGAGATGGCATCATCTGCAATTGCTGCAGTGAACTACTCTCAATATCTGAATTCAAAAGTCACGCAGGTTTCAAATTTAATCGCCCTTGTTTGAATCTTTGCTTGGACTCTGGGAGACCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAGTATAAGACAAGGAGAAGTAGGACCAGAACTGTTCAAGTTGATGAAGATGATCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATCTGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAACTGTACTTGCCGGATATGCGGTGGTCTGGTGAATTATGAAGAGACTTCAAGTTCTTCTGATGCGCTAAAATGTTCTCAGTGCGAGCAAAAGTATCATGGGCAATGCCTGAAACAAAAAGACATCGATTCTGGAGTAGAATCTCATATTTGGTTTTGTAGCGGGAGTTGCCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGATTAATCAGTTTGCAAATGGCTTTTCATGGATGCTTCTTAGATGCATTCATAACGACCAGAAAATTCTGTCCACCCCACGCTTAGCTATGATGGCAGAATGTAATTCCAGATTAGTAGTGGCTCTTACCATCATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATTTGGTGTACAGCTGGAAGGTACATGGATCAGAAATGGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGACGCCAGGGAATGTGTAGGCGTCTACTGAATGCTATAGAAGAGATGCTATTGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAAGAAGGAAATGATATAACATTGTTTCATTTGAACGGATCAACTAAATCAGGAATTCATTCAGGAGTACAACTTGACACCAATACAAAACGACAATGCGATTTCGACGAAGCATGTCCTACAATGGAAATGAAATGTTTAAAATATCAAGAATTGCAAGAACACAATCATGAAATGACGAAGGACAACCACGAAGGAAATCCAGCTCCTCCAATTGATTCATCTACATTGCAGTTGGTTGAATCAAATGGAATGGATACTTCTGCAGGACAGAAGTCTGTTGAGTCAGTACCACAACCTGATGGAAACTGTTGCAATGGCGTAGTTGGTGCCACAACTGAAACCCGCACCCATGAGGGGAAAGAGTCATTAGAAGTAGAAGATGGCGCAGAACGTGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTTCATGCAGCCGCAATGACGAGATTTGTAGAACCTGTTGTTTTAACTTAG 4026 40.41 MDFQDDGFEGSANEDIIFKEVFFGNSSSHSNKRCPHKAFSYERGPCKINEASLCSSSELSTVSSYSYSRNIKLDECYNATENIRTSSAPNSLPCKWTSVEGDNVNASAKRIKLSTDEASDSVPNLVKVMESSDSIREPVSTNCCPAEDCDSESFTFHIVESSRQGIISSCYLLKHFVERDSNLGDPDASKRTSLNLEGNDEPNMVNKVSASPVSQESSMTRLLVASPDTLNEKFGSALHLDVGQMKFLCPELDTSLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETMYRSPQGRAIREFSKAWRVCGELLVADKCSFAKKVDSREWTGIHKFLFDLSDTLLQVGKEMNQLGATPSLAHCWAILDPYVVVVFIDRKIGTLRKGDLVRAACSIGVNGSNKTDTFVTLTNEDSSICNLYADKNASPTHDNSPSAKSALTEGALKDLDGGNCAFDEQICDTSFSNYYGHTEDGTMKFPTKVSYDPNLENGLNCMGSHCDEPGNKIDTEDLASLPAYFSGSTCKSRCLADGPVPSGNSDNVVRISGFTSPDEDSTLYCSDEQSSENHVEKPNEMVKNAQTCSLVEEKKVEVPLDDKVENNLEESLNDCPNYTSDDLSHSCASGVVQKSSQNQEGGLHFSASMFKTENKVSAIHSILKKKGRRKCKKISEIKPTLAPQIDIVNVTPGKKTELWDIDGNCSQFDMIEDQKSHIADTKNVDSHEKCLSLSPISCHSERKGSKFKKNFDSLKGSKTRKKKLNECQIEDDDLLVSAIIRNKDVSSGDAGFSHVRKYLKSRAKMNRKRQKSSCKLLLRSLGNGEKNYKDGKWYAIGARTVLSWLLDAGVISSNDIIQYQSPKDDSVVKYGRITGDGIICNCCSELLSISEFKSHAGFKFNRPCLNLCLDSGRPFMLCQLQAWSTEYKTRRSRTRTVQVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRICGGLVNYEETSSSSDALKCSQCEQKYHGQCLKQKDIDSGVESHIWFCSGSCQKIYTALQSRLGLINQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKVHGSEMAEMPLIATCSKYRRQGMCRRLLNAIEEMLLSFKVKKLVIAAIPSLVETWTEEGNDITLFHLNGSTKSGIHSGVQLDTNTKRQCDFDEACPTMEMKCLKYQELQEHNHEMTKDNHEGNPAPPIDSSTLQLVESNGMDTSAGQKSVESVPQPDGNCCNGVVGATTETRTHEGKESLEVEDGAERDIQLSEGKSWDEGVHAAAMTRFVEPVVLT 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27308999 27326085 - Lsi04G020220.1 Lsi04g02022 662071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02022 1341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 937 988 IPR013083 -
Lsi04g02022 1341 SMART PHD_3 946 987 IPR001965 -
Lsi04g02022 1341 SMART PHD_3 988 1042 IPR001965 -
Lsi04g02022 1341 SUPERFAMILY FYVE/PHD zinc finger 924 988 IPR011011 -
Lsi04g02022 1341 MobiDBLite consensus disorder prediction 1265 1284 - -
Lsi04g02022 1341 Pfam PHD-finger 947 988 IPR019787 -
Lsi04g02022 1341 ProSiteProfiles Zinc finger PHD-type profile. 944 989 IPR019787 -
Lsi04g02022 1341 PANTHER PHD FINGER FAMILY PROTEIN 2 1181 - -
Lsi04g02022 1341 Pfam Tify domain binding domain 869 919 IPR032308 -
Lsi04g02022 1341 PANTHER INCREASED DNA METHYLATION 1 2 1181 IPR031086 -
Lsi04g02022 1341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 989 1046 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02022 - - - bhj:120086236 2399.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02282 Lsi-Chr2:29380985 Lsi04g02022 Lsi-Chr4:27308999 2.34E-85 dispersed
Lsi04g02022 Lsi-Chr4:27308999 Lsi10g01441 Lsi-Chr10:18485166 4.37E-63 dispersed
Lsi04g02022 Lsi-Chr4:27308999 Lsi09g01321 Lsi-Chr9:21057745 6.51E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25240 PF16135 TDBD 1.40E-15 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02022 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0