Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02025 ATGCTGAATTTCTTCTACTACTTGTGTTGTGGGTTGTGTCTTCGTATTTGGCCCGACTGTGTGCGAGTTAATGATCGAGCTCGAGGCATTGCAAACCTTCACAGCGAACCTCCTTGGAAAAAGCAAGTGATGTACAACATTGGTTTTTGCAAGGTCAACAATTTGCAATCTAATCGACGAGCTGCCGATGAAGAAGAAGAGCAGCCATCCAACCCTGTGATCATCGACAGGCTGCTCAGACTGAGGATTAACAAAACATTGGCAGAGTTGGGGAGAAGTGAGGATAAGGTTAAATATGTTGAAAACCAGGTTAGTTCAGCAAGTGCAAATGTGAAGAGATTATACTCTGATGTTGTTCAAGGTTTACTTCCACCTATAGGGGATCCCATGATATATGAAGCTAAAGCACCGGCTCAGAGGGGGCGTGTTCCTATTAATGCATATTTCAGGTCATTGTCACACAATGAAGGAAAAGCTGCAACTAATGTTGTTAATAAATCATCTGTGGGGGATAGTACGAGTACTACTTATAAAATAGATAACCAGAGTCAAGCATCTTGTAAAGCTCCCTTTGTAAATGAAGTTGCTCCAGTTCCTAATCATTCTTCTCTGGAGTTGAATGGTCATTTACCTTTGAAAAAGAATGATTATGTCTTGTTAGATAATGACTTATATGAGAACATGAAAGAAAACGCCAATAGTGAACTACTTCCAGAGAAAAGTGATGACACATTGAAAGATAAGCTTATCCTCATGGAGTCAGATGCTAGTGATCCTTTGAGTTACTCGCTTAGCAATGTAAGTACTGAAATAAATGATACTAATAATAGAGCTTCTTTGGTTTGTGATGGCTCTGATCTACAATCGAAGGATGATGTACTTTTAGTGGGGAACAATGATGGGGTTTTGACAGATAAAGATGCAAGCAAGAGTTTTGAAGAGGATACCACCATGAAGTTCAATGCTAGTGATCCTTTGAAGCATATGGCTAATCATACATCTTCTGAAGTTAAAGTTACAAATGGGGAAGCACTTATGATTTTGGATAATTCTCATTTACCGGTGGAATCTTCCAAACTCTCATGGAAGAATGACGACGACTTATCAAATGAGAACTCAGATGAGTTTCTAAAGAAGGTTGTCACCATGGAACCTAACACCGCTGATCATTTGAATGAAAACCATCTTAGTCATGTATGGAGTGAGACAAACTTTGTAAGTAAAGAAGCTGATGATTCTAATTTGCTTTTGACGTCTGTGGTGCTTTCAGGCGAAATCGATCATGCCATGATGGATAAAGACTTCAATAAGAGTCCTGTGAAGGGTACTATCTTTGACGATGATCCTAACAGTTATTTGTTAAATCTGCCCAGTCATGTAAATGGAATTAGCTTCACCAACGAAGAAGCTATTATGGTTTCTGATAGAAACCATTTGCAGTTGGAGACTGAGATACTTGCTAGAAAGAATGATGATGTCTTGACAGTTAAATATTCCAATGAAAGTTTAAAAAATGATACCATCTTGGAGTTGGAGCATGATGCAAGTTATCCTTCAAAGAACCAGCCAAGATGCACATCAAGCAGCATAAAATATAAAAATGAAGAAGTTTCTTCAGTTTCAAATGATTCTTTTCTCAAGTTGGAGAGTGAGGTTATTTCTGTGAAGGATAGTAAAGCTTTAATAGATAAAGTATCAGATCCAAGTTGTAAAGAACATGCCAATTTAGAATTATCAACTGAGTTAACTTCGCATTGTGGGGAAGAGTCAATTAAGGAAACTTTGTGCAGTTATGGTAATGAATGTGAAGGGGATATTGTGACCTCAAATGGAAATCCACAGGAAACTTCAATTCATTGTGCAGATGTTGAATCCATCCATAAAGTAGAACAAGCTTCCAGCATCTCGGTAAACAATTTTGTTGGCTTATCACTAAGGATGGAGACAACTTCGAAGTACTTGGAAAATGAAGCTGGTTATCCTTCTAATGCTGTAGATGCTACTTCTTCTGAACTGGCTTCGGTAGTTTTAACTAGTGGGGAAACTGTGGAACAGACGAAACCAGTCTCCTCTCTGAAACCCCTAGCAAAGGGTTCTTTTTTTGCTTTCAGAAGTTCGGTCAGCAACCTTTCTAGTAGCACTGTTGTTCATGAAAATCCTCCTGAACAAAATACATACATTGAATGTGTATCTCTTCCATCATTTGAAGTGGTCACTAGTCCATCTTATGGAAACAAGGCTTCAAAGATGAAATTTGTCTCCTCCAGAAGCTCCTTATCATCAATGGAATCATTAGTTGGGACTCATGCTTCAAGAGCCAATGATGCTGCATTTCTTCCTAAAATCTATACAAGTAGCCGGGGTTGTCCACACGATTCCAGTGGCTATATTTTGGATGCTGAAATGGAAACAGTGGATTTGGGACATAAAGTGACCCTTGAAGATGAGTGTGAGGTTGTTGACTATAAAGCTCTCCATGCTGTCTCTCGCAGAACTCAAAAGCTCCGTTCTTACAAGAAGAGAATCCAGGATGCTTTTACTTCCAAAAAGAGGTTGGCAAAGGAGTACGAACAACTAGCAATCTGGTATGGAGATACTGATATGGAATTCAGTACAAACAATTCACAGAAGTTGGGCAAGGAGAATGCATCAACTAGTTATGTATCCGACTCTGAGTGGGAGCTCCTGTAA 2691 39.06 MLNFFYYLCCGLCLRIWPDCVRVNDRARGIANLHSEPPWKKQVMYNIGFCKVNNLQSNRRAADEEEEQPSNPVIIDRLLRLRINKTLAELGRSEDKVKYVENQVSSASANVKRLYSDVVQGLLPPIGDPMIYEAKAPAQRGRVPINAYFRSLSHNEGKAATNVVNKSSVGDSTSTTYKIDNQSQASCKAPFVNEVAPVPNHSSLELNGHLPLKKNDYVLLDNDLYENMKENANSELLPEKSDDTLKDKLILMESDASDPLSYSLSNVSTEINDTNNRASLVCDGSDLQSKDDVLLVGNNDGVLTDKDASKSFEEDTTMKFNASDPLKHMANHTSSEVKVTNGEALMILDNSHLPVESSKLSWKNDDDLSNENSDEFLKKVVTMEPNTADHLNENHLSHVWSETNFVSKEADDSNLLLTSVVLSGEIDHAMMDKDFNKSPVKGTIFDDDPNSYLLNLPSHVNGISFTNEEAIMVSDRNHLQLETEILARKNDDVLTVKYSNESLKNDTILELEHDASYPSKNQPRCTSSSIKYKNEEVSSVSNDSFLKLESEVISVKDSKALIDKVSDPSCKEHANLELSTELTSHCGEESIKETLCSYGNECEGDIVTSNGNPQETSIHCADVESIHKVEQASSISVNNFVGLSLRMETTSKYLENEAGYPSNAVDATSSELASVVLTSGETVEQTKPVSSLKPLAKGSFFAFRSSVSNLSSSTVVHENPPEQNTYIECVSLPSFEVVTSPSYGNKASKMKFVSSRSSLSSMESLVGTHASRANDAAFLPKIYTSSRGCPHDSSGYILDAEMETVDLGHKVTLEDECEVVDYKALHAVSRRTQKLRSYKKRIQDAFTSKKRLAKEYEQLAIWYGDTDMEFSTNNSQKLGKENASTSYVSDSEWELL 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27337509 27344870 + Lsi04G020250.1 Lsi04g02025 662074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02025 896 PANTHER BNAA05G11610D PROTEIN 94 896 - -
Lsi04g02025 896 PANTHER F3N23.33 PROTEIN 94 896 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02025 - - - csv:101204627 989.564
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01584 Lsi-Chr10:20336283 Lsi04g02025 Lsi-Chr4:27337509 2.88E-06 transposed
Lsi04g02025 Lsi-Chr4:27337509 Lsi07g00297 Lsi-Chr7:3204696 2.34E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g132 . . . . . . . . . . Cma01g01240 Cma09g00825 . Car09g00742 Sed05g2529 . . Bhi09g03496 Tan01g4337 Cmetu07g0253 . . . . Cla11g01719 Cam11g1788 Cec11g1809 Cco11g1814 Clacu11g1947 Cmu11g1758 Cre11g2167 Cone6ag0184 Cone9ag0210 . . Lsi04g02025 Csa04g02297 Chy07g00034 Cme07g00545 . . . . . . . . . . Cmo09g00819 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007614 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02025 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g02025 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g02025 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Lsi04g02025 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0