Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02028 ATGCTTAGCTTTACACAGTTTAACCATCTTCTTCTTCCTCCAACAACCCAATTCAAATGCCAAGCTTCTTTTCCCAAATTTCAACCCCAATCCCACTTCTCCCTTCAACTATTTCCTCAACCATCATCCATTTCTCAGTTTCTCGCAAATCGGGCATCTGGGTATGGAGAATTATGTTTGTGCTCTTTGAATTCCCCGGGATTTTCTCCCCCTGATGAAGAATTCGATGATGAATTGGAGCGATTGTTGGTGCTTTTACCTGAAGAAATGCGGCGCAGAATAAGGGAGCATGAGGAGTGTCACCAACTGATTGAAGTGGTCTTGGATTTGGGTCGGAAACCACTGGCTCGGTTTCCTACGGGGGATTTCGTGCTCTCGGATTCTCAAGTAACTGTTGGTGATCTACGGCATGCTACTTCCAAGTATAGTATGACAATCTCGTCTGGTTTGAATTGGAGGAAAGTTGTATTTGAGGAGAGGAAGGCCTTGAGGGATTATGGAACTTGGAAATTTCTAACTGTACCACCGAGTAATTGGTGGAAGGTTGGTGACTTTGCTATTGACAATAGAGCCGGTATTAGTAGAACATTGCATCGGATCAGTGCCATCAGGAATCGGAAGGGTGTAATTATTGGTCTAACTTGTCGTGTGGGTCGAGCAATATCAGGAAGTGCTATCTTGCTGAGGGATTTGATTCAAGATGGGTCCTCTTTGTTGCTCATTGGGCCTCCGGGGGTGGGAAAAACCACAATTATCAGGGAAATAGCTAGGATACTTGCTAATGATTTCAAGAAGCGTGTAATGATTGTAGACACCTCCAATGAGATTGGTGGCGATGGTGATATACCTCATGCAGGAATTGGTAATGCTCGTCGAATGCAAGTTCCAGACTCTGATATGCAACATAAGGTTTTGATTGAAGCAGTTGAAAACCATATGCCTCAAGTAATCATTATAGATGAAATAAGCACAAAACTTGAAGCCATGGCTGCAAGCACCATAGCCCAACGTGGTATTCAGTTAGTTGCAACTGCTCATGGAGTTACAATTGAAAATCTGATCATGAATCCTTTACTGGAGATGCTTGTTGGAGGAATACAGAGTGTAACTCTTGGGGATGAGGAGGCAAGCCGGAGACGTGTTCAAAAGACTGTGCTGGAAAGAAAAGGACCTTCAACATTTGCTTGTGGGGTAGAAATCATATCGAAGACTGAGTTGAGAGTTCATCGTAGCCTTGAAGCAACTGTTGACGCCGTTCTTTGTGGTCGCTTTCCTAATGTTGAAGTTCGAAAGATAAATTCTACAGAAGAGAAAGAAACTATACAAAGTGATACTTTCATATCCACTTTCTCCCAGAATAAGGATGAAGCTCCAGTTAGTGTATCTGATACGTATTATGAGAAAAGTGGTCAGGAGCCCAGTGAGATATCATTTGAGGTCCTTCCGACTGCTGGAGAATCATCTGAAGAAGATGAAGGGAAGATTCCCCTTTATCTGTTTGTCTATGGGGTATTGGAAGCAAGTGTGATCCAAGGATTCAAGCAGTTAAGGATGAATGATGTGGGCATCCATTTTACTGATAATATCAGTGAAGCAGATGCCCTTTTTGCCTTGCAGTCCAAGCTTAAAAAGAATGCCGGGATTCAAGCTGCTGCAAAATCTCATGACATACCCATTTATGAAGCCAGAATGGCCATTGAGCAGATAGTTATCCCAAGAGAAGAGTCTGTTGAGCTCCTCCCTAGGCCACCCCACATCCTGTCTCTTCAGATGGACCTTATTCGGAAGTATCATCTACAGTCAGAGAGAATCGGCACGGAGACCAATGTTCGTCTACGAATCTTACCCGTGATTGCTATTGTGGATGAAAATGGGAAGATGCTAGGAAAAGTAGATCCTACTACCGAGTTCGATGACTTCATTGGTTCCAATGGTGACACCAATGGAACTCCCTATAGTGTGGACAGGTTACCGTTACTTCCTGAATAG 1989 43.49 MLSFTQFNHLLLPPTTQFKCQASFPKFQPQSHFSLQLFPQPSSISQFLANRASGYGELCLCSLNSPGFSPPDEEFDDELERLLVLLPEEMRRRIREHEECHQLIEVVLDLGRKPLARFPTGDFVLSDSQVTVGDLRHATSKYSMTISSGLNWRKVVFEERKALRDYGTWKFLTVPPSNWWKVGDFAIDNRAGISRTLHRISAIRNRKGVIIGLTCRVGRAISGSAILLRDLIQDGSSLLLIGPPGVGKTTIIREIARILANDFKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDSDMQHKVLIEAVENHMPQVIIIDEISTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPLLEMLVGGIQSVTLGDEEASRRRVQKTVLERKGPSTFACGVEIISKTELRVHRSLEATVDAVLCGRFPNVEVRKINSTEEKETIQSDTFISTFSQNKDEAPVSVSDTYYEKSGQEPSEISFEVLPTAGESSEEDEGKIPLYLFVYGVLEASVIQGFKQLRMNDVGIHFTDNISEADALFALQSKLKKNAGIQAAAKSHDIPIYEARMAIEQIVIPREESVELLPRPPHILSLQMDLIRKYHLQSERIGTETNVRLRILPVIAIVDENGKMLGKVDPTTEFDDFIGSNGDTNGTPYSVDRLPLLPE 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27367190 27376426 - Lsi04G020280.1 Lsi04g02028 662077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02028 662 Gene3D - 219 384 IPR027417 -
Lsi04g02028 662 SMART AAA_5 234 365 IPR003593 -
Lsi04g02028 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 379 IPR027417 -
Lsi04g02028 662 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 561 579 - -
Lsi04g02028 662 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 242 261 - -
Lsi04g02028 662 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 73 618 - -
Lsi04g02028 662 CDD AAA 217 322 - -
Lsi04g02028 662 CDD R3H_AAA 561 616 IPR034081 -
Lsi04g02028 662 Pfam Sporulation stage III, protein AA 227 364 IPR045735 -
Lsi04g02028 662 PANTHER KINASE-RELATED 73 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02028 - - - csv:101204864 1050.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02028 Lsi-Chr4:27367190 Lsi08g00693 Lsi-Chr8:15241640 1.52E-158 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g138 . . . . . . . . . . . Cma09g00828 . Car09g00743 Sed05g2531 Cpe06g00659 . Bhi09g03493 Tan01g4341 Cmetu07g2289 . Hepe01g1428 Mch11g1024 . Cla11g01721 Cam11g1790 Cec11g1811 Cco11g1817 Clacu11g1949 Cmu11g1759 Cre11g2168 Cone6ag0183 Cone9ag0208 . . Lsi04g02028 Csa04g02300 Chy07g00035 Cme07g00546 . . . . . . . . . . Cmo09g00821 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008962 2 1 1 2 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02028 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0