Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02032 ATGGGAAACTTTCCCTTTTTGTTTTCTTTCTTCTTGTTTGCTCTGATAGTTTCTGGGAAGCATGAAACTAAAAGAACTTTGAGATCAAAAATGGTTGATGGTGGAAGAGGCAGAATAGGGGCTATTGTAGACAAAAGTTCTAGGATTGGTAAGGAAGAGAGTTTAGCTATGCTGATGGCTGTAGAGGATTTTAACGACGTTGACAATCGAAATTTCAGTTTTTTCATCAGAGACTCTAAAAGTGATCCTAATCAGGCAGCTCTTGCAGCTGAAGATCTGATCAGCATGGAACAAGTTCAGGTTCTTATAGGGCCACAAACCTGGGAAGCAGTTTCTGTAGTTGCCAAGATCGGAAGTGAGAATCAGATTCCGGTTCTAGCAATGGCTAATAACATGCCAAAGTGGGCAACTGAGAGATTGGAATTTTTGGTCCAAGCTTCTCCCTCCCAGTTTAATCAAATGAGGGCCATAGCTGCTATTATTGGTTCGTGGGATTGGCGTCTGGTTAATGTTATATATGAAGATGGAGATTTCTCGACCACTGACATATTTCCTTACCTTGAGCATGCTCTCAAAGATGTAGGAGCTGAAATAAGTGAATTTGTTGGTCTCCCTCACTTTGATTCTAATTTATTGTCCAATGAACTAGAGAGGCTAAGAAGAGGGCCAAGTAGAGTTTTTGTAGTTCATATGTCTTTCAAGTTTGGATTGCATCTATTTCAAACTGCAAAGGAGATGGAAATGATGGAAAAAGACTATGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTTGATGTTTCTGTCAACTCTTTACTTCAAGGAGTTATTGGAGTCAAGAGTTACTTCCCGGAAAGCAATCCTCCGTTTCTTAATTTCTATCGTCGGTTCCGTAGTAGGTTTAGATTAGAGCATTCTGATGAGTACAACAATGAGCCTAGTATTTTCGCTGTACAGGCTTATGATGCTGTGAGAACAGCCGCTATGGCACTGAGTAGAACCCAAGGAAAAGGTGATCACTTGTTGGAATTCATCAACATCACTGATTTTCAAGGATTGGGTGGAAAGATTCAGTTTAAAGAGAGAAAATTAGCCCCAGTCAAAACTTTTCAAATCATCAATGTGATGGGTAGGAGTTATAGGGACCTAGGCTTCTGGTCTGACGAATTAGGCTTCTCACGGGAGTTGGGGGAAAATTCGTCTACTAGCTTGTCGATGAAGGATCTTGCCCAAGTGTTTTGGCCAGGTGGATATACGGAAACTCCGAGGGGATGGGCTATACCAACAGATGCCAGGCCGTTGAGAATTGGTGTGCCAACTAGTCCCATGTTCAAGCAGTATGTAAATGTGGAAGGAGATCAGATAGGAGACAATTTATCTTTCAATGGACTTGCAATTGATCTGTTTAAAGCAACCATAGACAATTTGTGCTTCCCTCTGCCGCATGAGTTCTACGCGTACAATGGAACATATGATGATTTAGTGAAGCAAATCTCTTTGAAGGATGCTTCTCCTTCTAACTATCTTTTCTTGTTCTGCCTGTTGATGAAGGAATTCGATGCAGCAGTAGGTGACATAGCAATAGTATCAACGCGTTATGAACATGCTGAATTTACACATCCTTACTCTGAAGCAGGACTTGTGATGATTGTTCCTACCATAAATAATAGAAGTAATAGAGCATTGTTATTCACAAAGCCCTTTACTTTGACCATGTGGATTGTAATTTCTGTGGTAAACGTCTACAATGGCTTTGTTGTTTGGTTTATAGAACGAAATCACGGTCCTCAACCCGAAGGTTCGATGTTTAGTCAAGCTGGAACCATGCTTTGTTCATCCTTCACCACTCTCTTCTCCTTGCAGGGTAATAGGCTGCACAGTAACTTGTCGCGGATGACCATGGTGGTTTGGTTATTTGTGGCACTTGTGATAACTCAGATATACACAGCCAATCTTACCAGCATGCTGACTATTCAAAAGCTTGAACCGACTATATCGAACATCGAGACTCTCCGAAGAATGAATGCTTTTGTGGGATATGGCAGAGGATCCTTTGTCAAAGGATATTTGGAGACAGTTTTACACTTCCCCACAGAAACCATAAAAAACTACTCCACACCTGATGGTTTAGCTGATGCTCTCAGAAACCAAGAGATAGCAGCTACTTTTCTTGAAGTTCCTTTTGCAAAATTATTCCTTGCAAGATTTTGCAAAGAGTTCATGATTTCTGGACCAACCTATAAAGTTGGAGGATTTGGATTTGCATTACCAAGAGGCTCTCTGTTGTTACCATATGTGAACCAAGCATTGCTTAAAGTATCTGAAACAGGCAAGTACAGAGAGTTGGAGGACAGCATGATTGCTAGTGAGAAATGTGAGGATGGGGAAGGGAAAGATGGAAGTCCAAGCCTCAGCCCCAACAGCTTCTTTTTACTATTTGTATTGAGTGCAGGAGTATCGACATTAGCACTCACATTCTATGTCTTTAATGCTACTCATAACTCTAATCTTCAACAAAACACTATTTGGAGATTAATGATAGCTGTAATGAGAAACTGGGGGAATCATAGAAGGGGATTTTCTCGACGGGTAAGTGACGAGCCACATACCATTCCAAATAACTTCTCAAACGCC 2643 40.98 MGNFPFLFSFFLFALIVSGKHETKRTLRSKMVDGGRGRIGAIVDKSSRIGKEESLAMLMAVEDFNDVDNRNFSFFIRDSKSDPNQAALAAEDLISMEQVQVLIGPQTWEAVSVVAKIGSENQIPVLAMANNMPKWATERLEFLVQASPSQFNQMRAIAAIIGSWDWRLVNVIYEDGDFSTTDIFPYLEHALKDVGAEISEFVGLPHFDSNLLSNELERLRRGPSRVFVVHMSFKFGLHLFQTAKEMEMMEKDYVWITTDSFTSLAHSFDVSVNSLLQGVIGVKSYFPESNPPFLNFYRRFRSRFRLEHSDEYNNEPSIFAVQAYDAVRTAAMALSRTQGKGDHLLEFINITDFQGLGGKIQFKERKLAPVKTFQIINVMGRSYRDLGFWSDELGFSRELGENSSTSLSMKDLAQVFWPGGYTETPRGWAIPTDARPLRIGVPTSPMFKQYVNVEGDQIGDNLSFNGLAIDLFKATIDNLCFPLPHEFYAYNGTYDDLVKQISLKDASPSNYLFLFCLLMKEFDAAVGDIAIVSTRYEHAEFTHPYSEAGLVMIVPTINNRSNRALLFTKPFTLTMWIVISVVNVYNGFVVWFIERNHGPQPEGSMFSQAGTMLCSSFTTLFSLQGNRLHSNLSRMTMVVWLFVALVITQIYTANLTSMLTIQKLEPTISNIETLRRMNAFVGYGRGSFVKGYLETVLHFPTETIKNYSTPDGLADALRNQEIAATFLEVPFAKLFLARFCKEFMISGPTYKVGGFGFALPRGSLLLPYVNQALLKVSETGKYRELEDSMIASEKCEDGEGKDGSPSLSPNSFFLLFVLSAGVSTLALTFYVFNATHNSNLQQNTIWRLMIAVMRNWGNHRRGFSRRVSDEPHTIPNNFSNA 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27435874 27439090 + Lsi04G020320.1 Lsi04g02032 662081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02032 881 Gene3D - 756 786 - -
Lsi04g02032 881 CDD GluR_Plant 435 790 - -
Lsi04g02032 881 Pfam Bacterial extracellular solute-binding proteins, family 3 520 787 IPR001638 -
Lsi04g02032 881 SUPERFAMILY Periplasmic binding protein-like II 412 787 - -
Lsi04g02032 881 Gene3D - 708 755 - -
Lsi04g02032 881 Gene3D - 158 314 - -
Lsi04g02032 881 Gene3D - 343 436 - -
Lsi04g02032 881 Gene3D - 565 694 - -
Lsi04g02032 881 Gene3D - 37 157 - -
Lsi04g02032 881 PANTHER GLUTAMATE RECEPTOR 32 877 - -
Lsi04g02032 881 SMART GluR_14 438 792 IPR001320 GO:0015276|GO:0016020
Lsi04g02032 881 PIRSF IGluLR_plant 1 875 IPR017103 -
Lsi04g02032 881 Gene3D - 437 564 - -
Lsi04g02032 881 Pfam Receptor family ligand binding region 54 378 IPR001828 -
Lsi04g02032 881 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 877 - -
Lsi04g02032 881 CDD PBP1_GABAb_receptor_plant 38 399 IPR044440 -
Lsi04g02032 881 Pfam Ligand-gated ion channel 788 820 IPR001320 GO:0015276|GO:0016020
Lsi04g02032 881 SUPERFAMILY Periplasmic binding protein-like I 38 429 IPR028082 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02032 - - - csv:101209708 1510.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02032 Lsi-Chr4:27435874 Lsi04g02034 Lsi-Chr4:27460551 0 dispersed
Lsi04g02032 Lsi-Chr4:27435874 Lsi04g02033 Lsi-Chr4:27446735 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02032 . . . . . . . Bpe14g00062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02032 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0