Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02034 ATGGGAAAGTTTCCTTTTCTGTTTTCTTTCTTCTTGTTTGCTTTGGTAGTTTCTGGAGAGCATGAAACTGAAGGAAACACCAACTCGACCATGGATGATAGTGGAAAGGGCAGAATAGGGGTCATTGTAGACAAGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTGTAGAGGATTTTAACTCCTTCAGCAATCAAAGTTTCAGTCTTGTCATCAGTGACTACAAAAGTGATCCAAATCTTGCAGCTCTTGCAGCTAATGATCTCATCAGTATGCAACAAGTTCAGGTTCTTATAGGACCACAAACTTGGGAAGCTGCATCCGTAGTTGCTGAGGTTGGAAATGAGAAACAGGTTCCTGTTCTAGCGTTAGCTAATGAAATACCAAAGTGGGCGACCGAGAGGTTCAAATTTTTGGTCCAAGCTTCTCCCTCCCAGTTAAACCAAATGAGTGCTATTGCTGGTATTATCAGTTCGTGGGATTGGCACCTTGTCAATGTCATATATGAAGATAGAGATTTCTCAACCACAGGAATATTTCCTCATCTTGTACACGCCCTCAAAGATGTAGGAGCTGAAGTATGTGAATTTGTTAGTCTCTCTCAATTTGATTTGGATTTATTTTCCAAAGAATTGGAGAGGCTAAGAAGAGGGTCAAGCAGAATTTTTGTAGTTCATATGTCTTTCAAGTTGTCACTGCATCTATTTGAGATAGCAAAAGAAATGGGAATGATGGGAAAGGACTATGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTCAATGCTTCTATCAACTCTTTACTACAAGGAGTTGTAGGAGTCAAGAGCTTCTTCCCTGAAGACAATCCTCAATTTCATGAATTTTATCTTCGGTTTTGTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCACGAGCCTGGTATTTTTGCGATACAGGCTTATGATGCTGCAAGGACAGCAGCTATAGCAATGAGTGAAATCCAAGAAAAGGGTAAGGGTAATCACTTGTTGGAAAAAATAAAGCTCACTGATTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGAAAACTAGCCCTGTCTGATACCTTTCAGATCATCAATGTGATGGGGAGGAGTTATAGGGAACTGGGCTTCTGGTCTGATAAATTAGGGTTCTCACGAGAGTTGAGGGAAAATTCGTCTTCTAGCTCGTCGATGAAGGATCTTGGCGAAGTGTTTTGGCCCGGTGGATCTTCGATAACTCCAAGGGGATGGGTTGTACCAACAGAAGCCAATTCATTGAGAATTGGGGTGCCTAGTTCCATGTTCAAACAGTATGTACATGTGGAAGAAGATCATATGGGAAACAATTTATCCTTCAACGGACTTGCAATTGATCTGTTTAAAGCAACCTTAGACAACCTTAACTTCCCTCTGCCCTACCACTTTGTTCGTTTCGATGGACCATATGATGATTTGGTGAAGCAAATCTACCTGAAGAACTTCGATGCAGCCGTAGGTGATATAGCAATATTATCAAGACGCTATGAACATGCGGAGTTTACACATCCTTACTCACAAGCAGGACTGGTGATGGTAGTTCCTACCATAAAAGATTCAAGTAATAGAGCATTGATGTTCACAAAGCCCTTTACAGTGACCATGTGGTTTGCAATTGCTGTGATAAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGAAATCGCTATTCCAGTCATGAAGGTTCGATGTTTAATCAAGCTGGAACCATGCTTTTCTCATCCTTCACCACTCTCTTCTCCTTACATGGTAATATGTTGCACAGTAACTTGTCCCGGATGACCATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTCGAACCGACGATAACGAATATTGAAACTCTCCAAAGGGCAAATGCGTTAGTGGGATATGGCAGAGGATCCTTTGTCAAAAGATATTTGGAAGAAGTCTTACACTTTCGTGCCGAAAACATAAGAAACTACTCTACACCTGATGATTATGCCGAAGCTCTCAGAAACCAGGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGCAGGGAATTCATGATATCTGGACCAACTTACAAAGTTGGAGGATTTGGATTTGCATTTCCGAGGGGCTCTCCGCTGTTAACAGATATTAACGAAGCATTGCTTAAGGTATCTGAAAGTGGGAAGTTCAGAGATTTGGAAGATAGAATGATTGCTAATGAGACATGTGAGGATGAGGATGCAAAGGATGAAAATTCAAGCCTCAGCCCCAACAGCTTCTTCATCCTATTTGTATTGAGTGGAGGAGTATCAACAATAGCTCTCACATTGTACATCTTGAATGCTCATAATAACTTCAGTTTTCAACAGAATACCATTTGGAGATTAATGATAGCTGTAATGAGATACTGGGGAAAGCACAGGAGGCAATTTTCTCGACGAGTAAGCGACGAACCACAAATGACTGTCTCAAATAACTTCTCGAATGCCACAAACTTGCAAATTCAGGTCTAG 2625 40.69 MGKFPFLFSFFLFALVVSGEHETEGNTNSTMDDSGKGRIGVIVDKSSRIGKEEILAMQMAVEDFNSFSNQSFSLVISDYKSDPNLAALAANDLISMQQVQVLIGPQTWEAASVVAEVGNEKQVPVLALANEIPKWATERFKFLVQASPSQLNQMSAIAGIISSWDWHLVNVIYEDRDFSTTGIFPHLVHALKDVGAEVCEFVSLSQFDLDLFSKELERLRRGSSRIFVVHMSFKLSLHLFEIAKEMGMMGKDYVWITTDSFTSLAHSFNASINSLLQGVVGVKSFFPEDNPQFHEFYLRFCQRFRLEHSDEDNHEPGIFAIQAYDAARTAAIAMSEIQEKGKGNHLLEKIKLTDFQGLSGKIQFKDRKLALSDTFQIINVMGRSYRELGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGGSSITPRGWVVPTEANSLRIGVPSSMFKQYVHVEEDHMGNNLSFNGLAIDLFKATLDNLNFPLPYHFVRFDGPYDDLVKQIYLKNFDAAVGDIAILSRRYEHAEFTHPYSQAGLVMVVPTIKDSSNRALMFTKPFTVTMWFAIAVINVYNGFVVWFIERNRYSSHEGSMFNQAGTMLFSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTITNIETLQRANALVGYGRGSFVKRYLEEVLHFRAENIRNYSTPDDYAEALRNQEIAAAFLEVPFVKIFLARFCREFMISGPTYKVGGFGFAFPRGSPLLTDINEALLKVSESGKFRDLEDRMIANETCEDEDAKDENSSLSPNSFFILFVLSGGVSTIALTLYILNAHNNFSFQQNTIWRLMIAVMRYWGKHRRQFSRRVSDEPQMTVSNNFSNATNLQIQV 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27460551 27464837 + Lsi04G020340.1 Lsi04g02034 662083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02034 874 Gene3D - 723 782 - -
Lsi04g02034 874 Pfam Receptor family ligand binding region 55 380 IPR001828 -
Lsi04g02034 874 Pfam Bacterial extracellular solute-binding proteins, family 3 462 773 IPR001638 -
Lsi04g02034 874 Gene3D - 156 314 - -
Lsi04g02034 874 Gene3D - 439 549 - -
Lsi04g02034 874 SMART GluR_14 440 777 IPR001320 GO:0015276|GO:0016020
Lsi04g02034 874 SUPERFAMILY Periplasmic binding protein-like II 417 773 - -
Lsi04g02034 874 CDD PBP1_GABAb_receptor_plant 38 401 IPR044440 -
Lsi04g02034 874 SUPERFAMILY Periplasmic binding protein-like I 38 431 IPR028082 -
Lsi04g02034 874 PANTHER GLUTAMATE RECEPTOR 30 866 - -
Lsi04g02034 874 Pfam Ligand-gated ion channel 774 805 IPR001320 GO:0015276|GO:0016020
Lsi04g02034 874 CDD GluR_Plant 439 775 - -
Lsi04g02034 874 Gene3D - 550 692 - -
Lsi04g02034 874 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 866 - -
Lsi04g02034 874 Gene3D - 332 438 - -
Lsi04g02034 874 PIRSF IGluLR_plant 1 871 IPR017103 -
Lsi04g02034 874 Gene3D - 36 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02034 - - - csv:101210201 1483.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02032 Lsi-Chr4:27435874 Lsi04g02034 Lsi-Chr4:27460551 0 dispersed
Lsi04g02034 Lsi-Chr4:27460551 Lsi07g00559 Lsi-Chr7:5904826 1.62E-139 dispersed
Lsi08g01476 Lsi-Chr8:22880361 Lsi04g02034 Lsi-Chr4:27460551 3.38E-114 dispersed
Lsi08g01477 Lsi-Chr8:22894604 Lsi04g02034 Lsi-Chr4:27460551 1.70E-98 dispersed
Lsi04g02033 Lsi-Chr4:27446735 Lsi04g02034 Lsi-Chr4:27460551 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g650 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02034 Lsi_Chr04 FPKM 0.24128 0.288181 0.0 0.237065 0.108224 0.088013 0.0 0.0 0.095693 0.0