Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02035 ATGGCTCAATTGCCCCCAAAAATACCCTCTTTCCCTCAAAATTGGCCTCATTTTCCTCCTCCTAATTCAATGCCCAATTTAACTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCTCCTCCGCCACCAACCACCCCAACTCTTCTTGGCTCGATGATTTTCTTGACTTCTCCACCGCCCGTCGCGGCCTTCACCGCAGATCCATTAGCGACTCCATTGCCTTCCTTGAAACCCCATTCTCCGATCAATGTCGTAACTCCGCCCTTCTACATCCTCCTCCTCCCTTTGACCGCCTCGACGACGACCAGCTTATGTCCATGTTTTCCGATGATATTTCCATTCCCATTCCTGCTTCCTCCTCCAATCCTTCCACTCCTTCCGACCAAAATAGTAACAACGATGACAAAAACCCCACCGACGACCCCATGTTTTCCACGCCACCGCCACCACCGCTCCCGCCGCATCAGTTGAAGAATGAACCTGGTGAGGTTGAAATTAGCTCCTCTTGCCAACTTCTGCATCAATCTCAACCGCCGCCGACTTCCTCCGCCGGTGATAATACCATTGATCCCAAAAGAGTTAAGAGAATTTTGGCAAATCGACAATCAGCACAAAGGTCGAGAGTCAGAAAATTGCAATATATTTCTGAGCTCGAGAGAAGTGTAACCACATTACAGACTGAAGTATCAGCATTGTCCCCAAGAGTGGCATTTTTAGACCACCAAAGATTGATCCTAAATGTTGATAATAGTGCTCTCAAGCAGAGAATTGCAGCTTTGGCTCAAGATAAGCTTTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAAATAGAGAGATTGAGGCAAGTTTACCACCAACAAAGTTTGAAGAAAATGAGCAGTAATCAAAATGGGGCGGCGCAGGCGCAAGCACCGTCGTCCGGAGAAGGTACACCGCCGCAAGCGGCTGAGACGGAGAAGGAGCAAGCTGTAAGTTGA 984 48.88 MAQLPPKIPSFPQNWPHFPPPNSMPNLTPSPPPPPPPPPPSSATNHPNSSWLDDFLDFSTARRGLHRRSISDSIAFLETPFSDQCRNSALLHPPPPFDRLDDDQLMSMFSDDISIPIPASSSNPSTPSDQNSNNDDKNPTDDPMFSTPPPPPLPPHQLKNEPGEVEISSSCQLLHQSQPPPTSSAGDNTIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKLFKDAHQEALKKEIERLRQVYHQQSLKKMSSNQNGAAQAQAPSSGEGTPPQAAETEKEQAVS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27466069 27469164 - Lsi04G020350.1 Lsi04g02035 662084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02035 327 MobiDBLite consensus disorder prediction 289 327 - -
Lsi04g02035 327 MobiDBLite consensus disorder prediction 114 141 - -
Lsi04g02035 327 PANTHER BASIC LEUCINE ZIPPER 34 1 308 - -
Lsi04g02035 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 243 IPR004827 GO:0003700|GO:0006355
Lsi04g02035 327 PANTHER BASIC LEUCINE ZIPPER 2 1 308 - -
Lsi04g02035 327 MobiDBLite consensus disorder prediction 289 315 - -
Lsi04g02035 327 SUPERFAMILY Leucine zipper domain 193 247 IPR046347 GO:0003700|GO:0006355
Lsi04g02035 327 MobiDBLite consensus disorder prediction 85 191 - -
Lsi04g02035 327 MobiDBLite consensus disorder prediction 163 189 - -
Lsi04g02035 327 CDD bZIP_plant_RF2 194 244 IPR044759 GO:0003700|GO:0006355
Lsi04g02035 327 Coils Coil 272 292 - -
Lsi04g02035 327 MobiDBLite consensus disorder prediction 1 53 - -
Lsi04g02035 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Lsi04g02035 327 Pfam bZIP transcription factor 193 237 IPR004827 GO:0003700|GO:0006355
Lsi04g02035 327 Gene3D - 192 264 - -
Lsi04g02035 327 SUPERFAMILY Formin homology 2 domain (FH2 domain) 31 40 - -
Lsi04g02035 327 MobiDBLite consensus disorder prediction 1 44 - -
Lsi04g02035 327 MobiDBLite consensus disorder prediction 143 158 - -
Lsi04g02035 327 SMART brlzneu 189 253 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00167 Lsi-Chr4:1833786 Lsi04g02035 Lsi-Chr4:27466069 1.47E-14 dispersed
Lsi04g02035 Lsi-Chr4:27466069 Lsi05g00156 Lsi-Chr5:2281823 4.43E-25 dispersed
Lsi10g00096 Lsi-Chr10:1539700 Lsi04g02035 Lsi-Chr4:27466069 9.42E-15 dispersed
Lsi11g01149 Lsi-Chr11:20026140 Lsi04g02035 Lsi-Chr4:27466069 9.05E-17 dispersed
Lsi04g02035 Lsi-Chr4:27466069 Lsi11g01421 Lsi-Chr11:22748437 2.69E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25242 PF00170 bZIP_1 9.20E-10 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02035 - - csv:101210452 421.779