Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02036 ATGCTCGAGGAGGTTGGAGGTAGAGGTCAAGGTCGAGAGTCATCGGATCCGACCTCAATAAGTATGGCAGCCTATAGAACGGACGACGATTACGATTACCTCTTTAAAGTGGTTCTCATCGGTGACTCGGGTGTGGGCAAATCCAATCTTCTCTCCAGGTTTACGCGTAATGAGTTCAGTCTTGAGTCCAAATCCACAATCGGTGTCGAATTCGCCACTCGGAGTATTCGGGTTGATGACAAGATCGTCAAGGCTCAGATTTGGGACACCGCAGGCCAAGAAAGATACCGAGCAATCACAAGTGCATACTATCGAGGAGCTGTTGGTGCATTGCTTGTCTATGATGTCACACGACACGTGACATTCGAAAATGTTGAGAGATGGTTGAAAGAGCTTAGGGATCACACCGATTCCAATATTGTGATAATGCTAGTCGGCAATAAGGCAGACTTGCGACATCTGCGTGCTGTTTCAACTGAGGATGCCAAGGCCTTTGCAGAGAAGGAGAACACGTTCTTCATGGAGACATCTGCCCTTGAGTCTCTGAATGTCGAGAATGCTTTTACCGAAGTGCTAACCCAAATCTATCGTGTAGTCTGCAGAAAAGCACTCGAGATTGGTGAGGATCCCGCAGCATTGCCTAAAGGACAAACCATTAACGTTGGAAACAGGGATGATGTTTCTGCAGTGAAGAAAGTTGGTTGCTGCTCTTCATGA 717 47.28 MLEEVGGRGQGRESSDPTSISMAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAKAFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVCRKALEIGEDPAALPKGQTINVGNRDDVSAVKKVGCCSS 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27480875 27483761 + Lsi04G020360.1 Lsi04g02036 662085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02036 238 Gene3D - 27 236 IPR027417 -
Lsi04g02036 238 ProSiteProfiles small GTPase Ras family profile. 23 238 IPR001806 GO:0003924|GO:0005525
Lsi04g02036 238 ProSiteProfiles small GTPase Rho family profile. 28 200 - -
Lsi04g02036 238 ProSiteProfiles small GTPase Rab1 family profile. 30 236 - -
Lsi04g02036 238 CDD Rab11_like 32 196 - -
Lsi04g02036 238 SMART rho_sub_3 37 194 IPR001806 GO:0003924|GO:0005525
Lsi04g02036 238 TIGRFAM small_GTP: small GTP-binding protein domain 33 191 IPR005225 GO:0005525
Lsi04g02036 238 SMART rab_sub_5 35 198 - -
Lsi04g02036 238 SMART ras_sub_4 32 198 - -
Lsi04g02036 238 Pfam Ras family 36 196 IPR001806 GO:0003924|GO:0005525
Lsi04g02036 238 PANTHER DRAB11-RELATED 22 236 - -
Lsi04g02036 238 SMART ran_sub_2 40 237 - -
Lsi04g02036 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 201 IPR027417 -
Lsi04g02036 238 PRINTS Transforming protein P21 ras signature 173 195 - -
Lsi04g02036 238 PRINTS Transforming protein P21 ras signature 58 74 - -
Lsi04g02036 238 PRINTS Transforming protein P21 ras signature 138 151 - -
Lsi04g02036 238 PRINTS Transforming protein P21 ras signature 35 56 - -
Lsi04g02036 238 PRINTS Transforming protein P21 ras signature 76 98 - -
Lsi04g02036 238 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 22 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02036 K07904 RAB11A; Ras-related protein Rab-11A - csv:101210695 424.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01217 Lsi-Chr3:22736920 Lsi04g02036 Lsi-Chr4:27480875 8.98E-96 dispersed
Lsi04g02036 Lsi-Chr4:27480875 Lsi10g00091 Lsi-Chr10:1493212 1.28E-145 dispersed
Lsi06g01291 Lsi-Chr6:23471122 Lsi04g02036 Lsi-Chr4:27480875 4.40E-31 dispersed
Lsi06g01292 Lsi-Chr6:23472540 Lsi04g02036 Lsi-Chr4:27480875 5.35E-39 dispersed
Lsi10g00090 Lsi-Chr10:1489802 Lsi04g02036 Lsi-Chr4:27480875 5.57E-32 dispersed
Lsi04g02036 Lsi-Chr4:27480875 Lsi02g00831 Lsi-Chr2:7763938 3.28E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g151 . . . . . . . . . . Cma01g01232 Cma09g00833 Car01g01053 Car09g00748 . Cpe06g00664 Cpe02g00684 Bhi09g03479 . . . Hepe01g1418 Mch11g1033 . Cla11g01728 Cam11g1798 Cec11g1819 Cco11g1825 Clacu11g1957 Cmu11g1767 Cre11g2175 . Cone10ag1362 . . Lsi04g02036 Csa04g02308 Chy07g00044 Cme07g00557 . . . . . . . . . Cmo01g01285 Cmo09g00827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02036 Lsi_Chr04 FPKM 5.863358 6.192381 5.159886 3.714258 6.961843 5.919876 6.717497 6.759469 6.093935 8.798319