Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02039 ATGGAATCTCAGCTCAAGAAGAGCCCTAAACCCAAATTGCTGAACCCCAATTGGGCGCTACTTCAACAAAAGCTGAAACCCCATGGGTCAAACCACTCAAGGTCCTCTAGTGTTCCGAAATCCGAAGCTTCATCAAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCAAATCATTCCCAGAAGAATATTCTCATTCCGGTGAATGATGACTTTAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAATTTGTACGCCCTATAGAGCGTGTGGTTGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGATTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCATTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGACACCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGAGCTCTTCGCCATCTTGCAGCCGAGTTTCTTGGCGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTGTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTCAAAGCTGAAATAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGAGGTGGTTTTGAATGA 801 43.7 MESQLKKSPKPKLLNPNWALLQQKLKPHGSNHSRSSSVPKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEIKLKLKQKKRKPRKKSKDGGGGFE 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27490055 27494961 - Lsi04G020390.1 Lsi04g02039 662088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02039 266 Pfam Exonuclease 81 228 IPR013520 -
Lsi04g02039 266 MobiDBLite consensus disorder prediction 46 61 - -
Lsi04g02039 266 MobiDBLite consensus disorder prediction 246 266 - -
Lsi04g02039 266 MobiDBLite consensus disorder prediction 1 63 - -
Lsi04g02039 266 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 41 256 - -
Lsi04g02039 266 SMART exoiiiendus 79 237 IPR013520 -
Lsi04g02039 266 CDD REX4_like 81 229 IPR037431 GO:0006364|GO:0008408
Lsi04g02039 266 SUPERFAMILY Ribonuclease H-like 81 229 IPR012337 -
Lsi04g02039 266 PANTHER RNA EXONUCLEASE 4 41 256 - -
Lsi04g02039 266 MobiDBLite consensus disorder prediction 24 44 - -
Lsi04g02039 266 Gene3D - 78 255 IPR036397 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02039 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - csv:101211187 469.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01561 Lsi-Chr2:21454077 Lsi04g02039 Lsi-Chr4:27490055 1.01E-12 dispersed
Lsi02g01562 Lsi-Chr2:21466201 Lsi04g02039 Lsi-Chr4:27490055 6.25E-22 dispersed
Lsi04g02039 Lsi-Chr4:27490055 Lsi08g00279 Lsi-Chr8:7011080 1.55E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02039 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0