Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02043 ATGTGGGCGATTGGAAATGGAACTGAAACTGACTTGAAGGTTCATGTGTTCTCATCATCTTTCGAGTTGCTCGAAAAACTTCACGAGAAATGGAGTTTGGTGAAGAAGAAACCATATCCAGCTATGTATTCCAGCATTTTTGGTGGAATTATTACAGATCCGGCTATGATGGTGATTCCTATTGATGACCACATGGTTCATCGAGGCCATGGCGTACATTTGTATGAGTTGGATGCCCACCTCGACCGCTTCCTAAGATCAGCTTCAAAAGCGAAGATCTCTTCTCCCTTCCCACGGTCGATTCTTCGGAGCATTCTTATCCAATTGACAGCAGCATCACAGCTCAAGAAAGGCACCTTAAGATACTGGTTAAGTGCAGGACCTGGAGATTTCTTGCTCACGCCTGCTGGAAATGCGAAATCTGCATTCTATGCGGTAGCCATTGATGAGGACTTCTCTCAGTGCAAAGAGGGGGTTAAAACGATAACATCCACGGTCCCGATGAAGACGCCTCAGTTTGCAACAATGAAGAATGTGAACTACCTACCAAATGTACTAGCCAAAATGGAAGCTGAAGAGAAAGGGGCATTTGCTTCCATTTGGGTTGATGAAGAAGGCTATATTGCAGAAGGTCCAAATGTGAATGTTGCATTTATAACCAATGAAAAGGAGCTTATCTTGCCTTCTTTCGACAAGGTTCTCTCGGGGTGCACCGCACTGCGTCTTCTTAAGCTGGCTCCAAAGCTGGTTAAGGATGGGAAGTTGAAGAGTGTAGGAACTGCAAACCTTACGGTTAAGGAAGCCAAGGGCGCTGCTGAAATGATGTTTGTAGGAAGCACACTTCCGCTACTGCCAATAATCTCATGGGATGAAGAACCTATTGGAGATGGAAGCGTCGGGGAACTGACGATGGCGCTATCGGATCTGCTTTGGGACGATATGGTCTCGGCTTCCGCATCAATGGCGACGCCCGCATCGCAGGACCTGCACCAGACCAATGCAGCGCCTAGACCTGGCCTCAGGAAGCCAGTCTTTGTTAAGATCGAACAGCTCAAGCCCGGCACCAATGGCCACACACTCATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCGGTCTCTCAGCACCTTCGACAGACGCGGATCGCCGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATTGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGCATTGAGCTCACTGAGCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA 1410 47.16 MWAIGNGTETDLKVHVFSSSFELLEKLHEKWSLVKKKPYPAMYSSIFGGIITDPAMMVIPIDDHMVHRGHGVHLYELDAHLDRFLRSASKAKISSPFPRSILRSILIQLTAASQLKKGTLRYWLSAGPGDFLLTPAGNAKSAFYAVAIDEDFSQCKEGVKTITSTVPMKTPQFATMKNVNYLPNVLAKMEAEEKGAFASIWVDEEGYIAEGPNVNVAFITNEKELILPSFDKVLSGCTALRLLKLAPKLVKDGKLKSVGTANLTVKEAKGAAEMMFVGSTLPLLPIISWDEEPIGDGSVGELTMALSDLLWDDMVSASASMATPASQDLHQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELTEPEDFVVKEDNNLSLVEYELVNVAEE 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27514150 27519524 - Lsi04G020430.1 Lsi04g02043 662092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02043 469 Pfam Amino-transferase class IV 73 289 IPR001544 GO:0003824
Lsi04g02043 469 Gene3D - 10 147 IPR043131 -
Lsi04g02043 469 SUPERFAMILY Nucleic acid-binding proteins 339 466 IPR012340 -
Lsi04g02043 469 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 46 316 IPR036038 GO:0003824
Lsi04g02043 469 Gene3D - 355 458 IPR012340 -
Lsi04g02043 469 Gene3D - 148 333 IPR043132 -
Lsi04g02043 469 PANTHER AMINO-ACID AMINOTRANSFERASE 16 318 - -
Lsi04g02043 469 PANTHER BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE-LIKE 16 318 - -
Lsi04g02043 469 CDD SoSSB_OBF 359 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02043 K18482 ADCL; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] - csv:101212163 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02043 Lsi-Chr4:27514150 Lsi08g01682 Lsi-Chr8:24559730 1.45E-68 dispersed
Lsi04g02043 Lsi-Chr4:27514150 Lsi04g02339 Lsi-Chr4:30591686 1.41E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g177 . . . . . . . . . . . Cma09g00841 . Car09g00754 . . . Bhi09g03466 . . . Hepe01g1411 . . Cla11g01733 Cam11g1803 Cec11g1823 Cco11g1829 Clacu11g1962 Cmu11g1772 Cre11g2179 . Cone9ag0197 . . Lsi04g02043 Csa04g02315 Chy07g00050 Cme07g00568 Blo07g00954 . Bda05g00775 . . Bpe03g00842 . . . . Cmo09g00834 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011556 1 2 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 5 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02043 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 2.346834 1.799496 2.315746 0.0 0.0 0.0