Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02049 ATGGCTGCCGTAGACCGGTCGACATCCACCGCCTCAACCGCCGCGCCGCCCAATTCTAAAGAGATCCGCTACAGGGGCGTTAGAAAGAGGCCGTGGGGGCGCTACGCCGCGGAAATCAGGGACCCACGTAAGAAGACTAGGGTTTGGCTTGGCACATTCAACACCGCTGAAGAGGCGGCGCGTGCTTATGACACGGCCGCGCGTGAATTTAGAGGCGCAAATGCCAAAACTAACTTCCCCATTCAGAACGAATTCCTATTCGTCGACAACAATAACAACTTCCGTAAATCCGCTTGCAGCAGTAGTCCCAGCCAGTGCAGCACCGTCGACTCCTCTTCCCCCTCGCCAGCGCCGTCGGATCCCTCCCTCACTCACTTCCTCGACGCCGGCGTCCACGCGCCGGCCATTTCCCGCTCAATTTTCTTCTTCGACGCGTTCGCTCAGGCGGAGAAGATCAGTGACTTTCGTCGGACCGTTACCGTCGCCGGTACCGGCGGATCTGTGAGCGACTCCGATTCGTCATCCGTAGTTGATTTCGACACTACGCGTAAATCTCGGCCGTTGGATTTTGACCTGAATCTTCCGGCTGTGGAAGTTGTCTGA 603 57.55 MAAVDRSTSTASTAAPPNSKEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPIQNEFLFVDNNNNFRKSACSSSPSQCSTVDSSSPSPAPSDPSLTHFLDAGVHAPAISRSIFFFDAFAQAEKISDFRRTVTVAGTGGSVSDSDSSSVVDFDTTRKSRPLDFDLNLPAVEVV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27600605 27601207 + Lsi04G020490.1 Lsi04g02049 662098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02049 200 PANTHER ERF FAMILY PROTEIN 131 189 - -
Lsi04g02049 200 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Lsi04g02049 200 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Lsi04g02049 200 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Lsi04g02049 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 118 - -
Lsi04g02049 200 PANTHER ERF FAMILY PROTEIN 1 118 - -
Lsi04g02049 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 131 189 - -
Lsi04g02049 200 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Lsi04g02049 200 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700|GO:0006355
Lsi04g02049 200 MobiDBLite consensus disorder prediction 102 120 - -
Lsi04g02049 200 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Lsi04g02049 200 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Lsi04g02049 200 MobiDBLite consensus disorder prediction 102 121 - -
Lsi04g02049 200 MobiDBLite consensus disorder prediction 1 27 - -
Lsi04g02049 200 MobiDBLite consensus disorder prediction 1 17 - -
Lsi04g02049 200 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00774 Lsi-Chr2:7111309 Lsi04g02049 Lsi-Chr4:27600605 2.29E-30 dispersed
Lsi04g02049 Lsi-Chr4:27600605 Lsi10g01565 Lsi-Chr10:20065741 8.32E-35 dispersed
Lsi09g01454 Lsi-Chr9:22511918 Lsi04g02049 Lsi-Chr4:27600605 7.61E-26 dispersed
Lsi11g00320 Lsi-Chr11:3283759 Lsi04g02049 Lsi-Chr4:27600605 1.87E-22 dispersed
Lsi04g02049 Lsi-Chr4:27600605 Lsi01g00298 Lsi-Chr1:2656867 2.07E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25244 PF00847 AP2 4.20E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02049 K09286 - csv:101213540 253.832