Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02051 CTTAGAGCTTCTTCTCACGTCAACAATGGCAGTGATCGTGTCCTTCCCGTACTGGACGATGGACGAATTTATGGGCAAAAGGCGGTTCCCATTTTTCTCAATTCAACCTACTTCAACTGTGGCGGAATCCTTTCCCCGTTGAAGCTGAGGCGGAGGACGGGAGCTAAGGAGCGTGGAAGCGATGGGACGGATGTTTGTTGTGGAAAGGGAAGGCAGGTCCTACAGATGCAAGTACTGCAATACGCAGTTAGCTCTCTTCGACGACCTTGCATCTCGGGTCGTCTAACTTTTTCGCTCTTATTTGATCAGTCCTTTCATTGCCGCCGTGGAAAAGCCTACCTTTTCAATAACGCGATAAACATTTCTTTTGGAGCATTGGAAGAGAGGATGATGCTCTCAGGATTGCACACTGTAGCAGACATATTTTGTTGCACATGTGGACAAATCGTCGGGTGGAAATATGTAAACTCTCCCTATTATCCTCCGCACACTGCAAAAGAAATTGCATTTGGTTACCAATATGAGGCAGCACATGAGAAGAGCCAAAAGTACAAGGAGGGGAAGTATGTTCTTGAAAGGGGGAGGATAGTCGATGACATTGAATTCTCGACGGGCTTCTTTATAGACTCTCGGTCCAGTATCAGTGATAGCGAAGATAATTAG 663 46.46 LRASSHVNNGSDRVLPVLDDGRIYGQKAVPIFLNSTYFNCGGILSPLKLRRRTGAKERGSDGTDVCCGKGRQVLQMQVLQYAVSSLRRPCISGRLTFSLLFDQSFHCRRGKAYLFNNAINISFGALEERMMLSGLHTVADIFCCTCGQIVGWKYVNSPYYPPHTAKEIAFGYQYEAAHEKSQKYKEGKYVLERGRIVDDIEFSTGFFIDSRSSISDSEDN 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27610731 27614557 + Lsi04G020510.1 Lsi04g02051 662100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02051 220 ProSiteProfiles Yippee domain profile. 82 200 IPR034751 -
Lsi04g02051 220 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 98 219 IPR039058 -
Lsi04g02051 220 PANTHER PROTEIN YIPPEE-LIKE 98 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02051 - - - csv:101213776 162.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02051 Lsi-Chr4:27610731 Lsi09g00007 Lsi-Chr9:53933 2.07E-22 dispersed
Lsi04g02051 Lsi-Chr4:27610731 Lsi01g01534 Lsi-Chr1:13453458 2.03E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g185 . . . . . . . . . . Cma01g01220 . Car01g01043 Car09g00760 Sed04g2416 Cpe06g00674 Cpe02g00692 Bhi09g03456 Tan01g4371 Cmetu07g1273 . Hepe01g1404 Mch11g1047 . Cla11g01741 . Cec11g1830 . Clacu11g1970 Cmu11g1780 Cre11g2186 . Cone9ag0190 . . Lsi04g02051 Csa04g02323 . Cme07g00575 . . . . . . . . . Cmo01g01274 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000236 2 9 4 4 3 3 7 3 3 4 6 3 6 4 5 7 2 5 7 4 5 4 5 3 5 3 5 13 16 4 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02051 Lsi_Chr04 FPKM 31.722519 36.703087 1.641013 1.562368 88.586151 88.444443 89.003761 1.766834 1.62611 1.700628