Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02052 ATGAAGAGAAGTAGGAGAAAGAGTAAGAGTAGTAGGAAATTGAAGTCCAAGAAGCTGCGGTATCGCCACGATTCTCCTTCTTGCTCAGACACTGATTTTGAGAGTTCAACTTCAATGTCTTCATCTAGCTCGGAGGATGACAAAAAGGTGAGAAGATCTCGATCCAAGACGCGAAAGAATGCGAAGCCTAGTAAAAAGAGATCCAAAAAGCAATCTCATGATCATCAAAGTAGGGAATGCTCTCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAAATGACCGTTGTGAGGTGAAGAAGGCCAACAAAAAGAAGCGTAGAAGAGATGTGAGTGTTGGTGCCTATGGTGACTCTTTGAGCTCCTCAACTTGTGGAAATGGCAGTACAACCAGCAATGAGAGTGAAGTTGTTAGGCGTAGGGGCAGGTGTGGAAAGAGGAAAGGAAATATGGGAAAGACTGAAAGAATTAGAAACAGGTCAAAGAGTCGTTCACCATGCTCTTTATATGGTGAAGGTAGTGATTATCAGAATGAGGTTGATGGTGACAGTTATGTTGAATACACCTTTAAACGACTAAGGTCCATAATTGTTGTAGTAGGGGAGGAAAATAAATTAAAGACCTTTGTTGGGAATGAACAACAAGAAGGGGTCACACATCAGCCTGATGATGACCACCCTTCTTTTGGAGACTTGGACAGTAAGGATGTGATAAGTAAAAGAGAATTAGACTGTGTTATATCAGAAGAGGCACCATTGGTAGAAAACGAAGAAGTGGATATACCTGACAGTAGGAACTCTATCGTTGTAAAGGATGATGGAGTTCAAAATGAAGGAAGCAACAAAAACCATGGAGGAGTAACTAATGATCATTCTTTAGATGAAAGAACTTATGGCTGTTCTGGAAATACTGACAGCGTAAATTGTATTGATTTAGAGTCAATTTTAAGGCAGAGGGCTTTGGAAAACCTTAGAAAGTTCAAAGGGGCTCCCCCAAGGAATGTGGAAGCTATTGCTAATTGCAAAGGTGACCATAATAATGATGCAAAGCAATTGTATTCTCCTGACTCTAAGTCAGTTCATGTGACATCTCCTAGGGATGATGCTGAGATAAATAGTGAAGGGTTCTCTAGACAAGGTGGAGGGAATGCGGTAAATTCAATGACAGTTAAGGAGAATGGTGTTAAATCTACAGATGCAATAGATTCAGCAGTTGCATCTATGCATGACCCAGTCTATTCTTCACAGAATCTGGGTATGATTTCCAATGGAAGCAATGGTATGAATGAACTGAAGCAGGATATTTCTTCATTAGACCAGGAGGTTATAAATGATAGTATTTGCCAGAAGACAGATGTAGATATTTGTTCTACAACTAACAGAAGTAATTTGGTTATTGCAGCTTTGAGGCCTGAGCCAAAAGTTGATTCTATTATAAAGCAGGCATCTGCTGCTGAGGAATCTATCCAAACAAAGCCATCCATATCTGACATTGGTGTAGACGAGACTGCTCAAACTCAGACCCAAATGAGGAATAATGACGATGAAAATATTCATAATGGTTTAGGTTCTTCAGCTCACAAGCCTTCTTCTTCCCTTAATTCTATTTCAGGAGAGAATAGCTTGAATATGTCCAGACACGAGAGTGGAGAAGGCTCACAGTTTGAACAGAAAACCATGTCTGTGATGCGGGGTGGTGAGATGGTGCAGGTGAACTACAAGGTCTACATCCCGAAGAGAGCTCCCGCTTTGACTAGGAAGCAACTCAAGCGGTAA 1773 41.0 MKRSRRKSKSSRKLKSKKLRYRHDSPSCSDTDFESSTSMSSSSSEDDKKVRRSRSKTRKNAKPSKKRSKKQSHDHQSRECSPHPRKRKHSKRNDRCEVKKANKKKRRRDVSVGAYGDSLSSSTCGNGSTTSNESEVVRRRGRCGKRKGNMGKTERIRNRSKSRSPCSLYGEGSDYQNEVDGDSYVEYTFKRLRSIIVVVGEENKLKTFVGNEQQEGVTHQPDDDHPSFGDLDSKDVISKRELDCVISEEAPLVENEEVDIPDSRNSIVVKDDGVQNEGSNKNHGGVTNDHSLDERTYGCSGNTDSVNCIDLESILRQRALENLRKFKGAPPRNVEAIANCKGDHNNDAKQLYSPDSKSVHVTSPRDDAEINSEGFSRQGGGNAVNSMTVKENGVKSTDAIDSAVASMHDPVYSSQNLGMISNGSNGMNELKQDISSLDQEVINDSICQKTDVDICSTTNRSNLVIAALRPEPKVDSIIKQASAAEESIQTKPSISDIGVDETAQTQTQMRNNDDENIHNGLGSSAHKPSSSLNSISGENSLNMSRHESGEGSQFEQKTMSVMRGGEMVQVNYKVYIPKRAPALTRKQLKR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27624434 27627598 + Lsi04G020520.1 Lsi04g02052 662101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02052 590 MobiDBLite consensus disorder prediction 512 556 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 115 134 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 343 386 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 147 161 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 1 20 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 53 72 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 273 293 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 1 172 - -
Lsi04g02052 590 MobiDBLite consensus disorder prediction 82 107 - -
Lsi04g02052 590 PANTHER TRANSCRIPTIONAL REGULATOR ATRX-LIKE PROTEIN 2 590 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02052 - - - csv:101205593 874.004
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g186 . . . . . . . . . . Cma01g01218 Cma09g00848 Car01g01042 Car09g00761 . Cpe06g00676 Cpe02g00693 Bhi09g03455 . . . Hepe01g1403 . . Cla11g01743 Cam11g1811 Cec11g1831 Cco11g1837 Clacu11g1971 Cmu11g1781 Cre11g2188 Cone6ag0164 . . . Lsi04g02052 Csa04g02324 Chy07g00056 Cme07g00577 . . . . . . . . . Cmo01g01273 Cmo09g00841 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005837 1 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02052 Lsi_Chr04 FPKM 15.708583 19.571371 28.596853 34.484249 16.155148 15.207509 10.816598 34.830692 37.580158 34.386269